Loading…
Segment aorta and localize landmarks simultaneously on noncontrast CT using a multitask learning framework for patients without severe vascular disease
Non-contrast chest CT is widely used for lung cancer screening, and its images carry potential information of the thoracic aorta. The morphological assessment of the thoracic aorta may have potential value in the presymptomatic detection of thoracic aortic-related diseases and the risk prediction of...
Saved in:
Published in: | Computers in biology and medicine 2023-06, Vol.160, p.107002-107002, Article 107002 |
---|---|
Main Authors: | , , , , , , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c452t-114dba4ee342bd1f014050b82951534302db44dc580905597a428f1bc89b02a93 |
---|---|
cites | cdi_FETCH-LOGICAL-c452t-114dba4ee342bd1f014050b82951534302db44dc580905597a428f1bc89b02a93 |
container_end_page | 107002 |
container_issue | |
container_start_page | 107002 |
container_title | Computers in biology and medicine |
container_volume | 160 |
creator | Yang, Jinrong Li, Xiang Cheng, Jie-Zhi Xue, Zhong Shi, Feng Ji, Yuqing Wang, Xuechun Yang, Fan |
description | Non-contrast chest CT is widely used for lung cancer screening, and its images carry potential information of the thoracic aorta. The morphological assessment of the thoracic aorta may have potential value in the presymptomatic detection of thoracic aortic-related diseases and the risk prediction of future adverse events. However, due to low vasculature contrast in such images, visual assessment of aortic morphology is challenging and highly depends on physicians’ experience.
The main objective of this study is to propose a novel multi-task framework based on deep learning for simultaneous aortic segmentation and localization of key landmarks on unenhanced chest CT. The secondary objective is to use the algorithm to measure quantitative features of thoracic aorta morphology.
The proposed network is composed of two subnets to carry out segmentation and landmark detection, respectively. The segmentation subnet aims to demarcate the aortic sinuses of the Valsalva, aortic trunk and aortic branches, whereas the detection subnet is devised to locate five landmarks on the aorta to facilitate morphology measures. The networks share a common encoder and run decoders in parallel, taking full advantage of the synergy of the segmentation and landmark detection tasks. Furthermore, the volume of interest (VOI) module and the squeeze-and-excitation (SE) block with attention mechanisms are incorporated to further boost the capability of feature learning.
Benefiting from the multitask framework, we achieved a mean Dice score of 0.95, average symmetric surface distance of 0.53 mm, Hausdorff distance of 2.13 mm for aortic segmentation, and mean square error (MSE) of 3.23 mm for landmark localization in 40 testing cases.
We proposed a multitask learning framework which can perform segmentation of the thoracic aorta and localization of landmarks simultaneously and achieved good results. It can support quantitative measurement of aortic morphology for further analysis of aortic diseases, such as hypertension.
In this paper, an automatic multitask learning framework (M-SL) is proposed for simultaneous aorta segmentation and landmark localization in NCCT (noncontrast CT). Our main contributions are summarized as follows:•A multitask learning framework is proposed for simultaneous aorta segmentation and landmark localization.•This parallel and end-to-end learning strategy can take advantage of the synergy of segmentation and landmark detection.•The volume of interest (VOI) module |
doi_str_mv | 10.1016/j.compbiomed.2023.107002 |
format | article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2814525218</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0010482523004675</els_id><sourcerecordid>2815942683</sourcerecordid><originalsourceid>FETCH-LOGICAL-c452t-114dba4ee342bd1f014050b82951534302db44dc580905597a428f1bc89b02a93</originalsourceid><addsrcrecordid>eNqFkc-OFCEQxonRuOPqKxgSL156LGiYoY86Wf8km3hwPROarl6ZoWEEejbri_i60pndmHjxRKr4FR_1fYRQBmsGbPNuv7ZxOvYuTjisOfC2trcA_AlZMbXtGpCteEpWAAwaobi8IC9y3gOAgBaek4t2WzHWblbk9ze8nTAUamIqhpowUB-t8e4XUl-ryaRDptlNsy8mYJyzv6cx0BCDjaEkkwvd3dA5u3BLDV0wV0w-UI8mhaU5JjPhXUwHOsZEj6a4KpfpnSs_4lxoxhMmpCeT7exNooPLaDK-JM9G4zO-ejgvyfePVze7z831109fdu-vGyskLw1jYuiNQGwF7wc2AhMgoVe8k6x60AIfeiEGKxV0IGW3NYKrkfVWdT1w07WX5O353WOKP2fMRU8uW_T-vKzmilUhyZmq6Jt_0H2cU6i_WyjZCb5RbaXUmbIp5pxw1Mfkqov3moFewtN7_Tc8vYSnz-HV0dcPAnO_3D0OPqZVgQ9nAKsjJ4dJZ1vdtDi4hLboIbr_q_wBGB-ydA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2815942683</pqid></control><display><type>article</type><title>Segment aorta and localize landmarks simultaneously on noncontrast CT using a multitask learning framework for patients without severe vascular disease</title><source>ScienceDirect Journals</source><creator>Yang, Jinrong ; Li, Xiang ; Cheng, Jie-Zhi ; Xue, Zhong ; Shi, Feng ; Ji, Yuqing ; Wang, Xuechun ; Yang, Fan</creator><creatorcontrib>Yang, Jinrong ; Li, Xiang ; Cheng, Jie-Zhi ; Xue, Zhong ; Shi, Feng ; Ji, Yuqing ; Wang, Xuechun ; Yang, Fan</creatorcontrib><description>Non-contrast chest CT is widely used for lung cancer screening, and its images carry potential information of the thoracic aorta. The morphological assessment of the thoracic aorta may have potential value in the presymptomatic detection of thoracic aortic-related diseases and the risk prediction of future adverse events. However, due to low vasculature contrast in such images, visual assessment of aortic morphology is challenging and highly depends on physicians’ experience.
The main objective of this study is to propose a novel multi-task framework based on deep learning for simultaneous aortic segmentation and localization of key landmarks on unenhanced chest CT. The secondary objective is to use the algorithm to measure quantitative features of thoracic aorta morphology.
The proposed network is composed of two subnets to carry out segmentation and landmark detection, respectively. The segmentation subnet aims to demarcate the aortic sinuses of the Valsalva, aortic trunk and aortic branches, whereas the detection subnet is devised to locate five landmarks on the aorta to facilitate morphology measures. The networks share a common encoder and run decoders in parallel, taking full advantage of the synergy of the segmentation and landmark detection tasks. Furthermore, the volume of interest (VOI) module and the squeeze-and-excitation (SE) block with attention mechanisms are incorporated to further boost the capability of feature learning.
Benefiting from the multitask framework, we achieved a mean Dice score of 0.95, average symmetric surface distance of 0.53 mm, Hausdorff distance of 2.13 mm for aortic segmentation, and mean square error (MSE) of 3.23 mm for landmark localization in 40 testing cases.
We proposed a multitask learning framework which can perform segmentation of the thoracic aorta and localization of landmarks simultaneously and achieved good results. It can support quantitative measurement of aortic morphology for further analysis of aortic diseases, such as hypertension.
In this paper, an automatic multitask learning framework (M-SL) is proposed for simultaneous aorta segmentation and landmark localization in NCCT (noncontrast CT). Our main contributions are summarized as follows:•A multitask learning framework is proposed for simultaneous aorta segmentation and landmark localization.•This parallel and end-to-end learning strategy can take advantage of the synergy of segmentation and landmark detection.•The volume of interest (VOI) module and squeeze-and-excitation (SE) block are incorporated to boost the capability.•The proposed framework has been applied and validated on NCCT, which makes aortic measurements on NCCT feasible.</description><identifier>ISSN: 0010-4825</identifier><identifier>EISSN: 1879-0534</identifier><identifier>DOI: 10.1016/j.compbiomed.2023.107002</identifier><identifier>PMID: 37187136</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Algorithms ; Aorta ; Aorta - diagnostic imaging ; Aorta segmentation ; Aortic Diseases ; Body measurements ; Cancer screening ; Chest ; Coders ; Computed tomography ; Coronary vessels ; Decoders ; Deep learning ; Early Detection of Cancer ; Health risks ; Humans ; Hypertension ; Image contrast ; Image Processing, Computer-Assisted - methods ; Image segmentation ; Interfaces ; Landmark localization ; Localization ; Lung cancer ; Lung Neoplasms ; Medical imaging ; Medical screening ; Metric space ; Morphology ; Multitask learning ; Noncontrast CT ; Simultaneous discrimination learning ; Sinuses ; Thorax ; Tomography, X-Ray Computed - methods ; Vascular diseases ; Veins & arteries</subject><ispartof>Computers in biology and medicine, 2023-06, Vol.160, p.107002-107002, Article 107002</ispartof><rights>2023 The Authors</rights><rights>Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.</rights><rights>2023. The Authors</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c452t-114dba4ee342bd1f014050b82951534302db44dc580905597a428f1bc89b02a93</citedby><cites>FETCH-LOGICAL-c452t-114dba4ee342bd1f014050b82951534302db44dc580905597a428f1bc89b02a93</cites><orcidid>0000-0001-5718-9420 ; 0000-0002-6394-7408</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37187136$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yang, Jinrong</creatorcontrib><creatorcontrib>Li, Xiang</creatorcontrib><creatorcontrib>Cheng, Jie-Zhi</creatorcontrib><creatorcontrib>Xue, Zhong</creatorcontrib><creatorcontrib>Shi, Feng</creatorcontrib><creatorcontrib>Ji, Yuqing</creatorcontrib><creatorcontrib>Wang, Xuechun</creatorcontrib><creatorcontrib>Yang, Fan</creatorcontrib><title>Segment aorta and localize landmarks simultaneously on noncontrast CT using a multitask learning framework for patients without severe vascular disease</title><title>Computers in biology and medicine</title><addtitle>Comput Biol Med</addtitle><description>Non-contrast chest CT is widely used for lung cancer screening, and its images carry potential information of the thoracic aorta. The morphological assessment of the thoracic aorta may have potential value in the presymptomatic detection of thoracic aortic-related diseases and the risk prediction of future adverse events. However, due to low vasculature contrast in such images, visual assessment of aortic morphology is challenging and highly depends on physicians’ experience.
The main objective of this study is to propose a novel multi-task framework based on deep learning for simultaneous aortic segmentation and localization of key landmarks on unenhanced chest CT. The secondary objective is to use the algorithm to measure quantitative features of thoracic aorta morphology.
The proposed network is composed of two subnets to carry out segmentation and landmark detection, respectively. The segmentation subnet aims to demarcate the aortic sinuses of the Valsalva, aortic trunk and aortic branches, whereas the detection subnet is devised to locate five landmarks on the aorta to facilitate morphology measures. The networks share a common encoder and run decoders in parallel, taking full advantage of the synergy of the segmentation and landmark detection tasks. Furthermore, the volume of interest (VOI) module and the squeeze-and-excitation (SE) block with attention mechanisms are incorporated to further boost the capability of feature learning.
Benefiting from the multitask framework, we achieved a mean Dice score of 0.95, average symmetric surface distance of 0.53 mm, Hausdorff distance of 2.13 mm for aortic segmentation, and mean square error (MSE) of 3.23 mm for landmark localization in 40 testing cases.
We proposed a multitask learning framework which can perform segmentation of the thoracic aorta and localization of landmarks simultaneously and achieved good results. It can support quantitative measurement of aortic morphology for further analysis of aortic diseases, such as hypertension.
In this paper, an automatic multitask learning framework (M-SL) is proposed for simultaneous aorta segmentation and landmark localization in NCCT (noncontrast CT). Our main contributions are summarized as follows:•A multitask learning framework is proposed for simultaneous aorta segmentation and landmark localization.•This parallel and end-to-end learning strategy can take advantage of the synergy of segmentation and landmark detection.•The volume of interest (VOI) module and squeeze-and-excitation (SE) block are incorporated to boost the capability.•The proposed framework has been applied and validated on NCCT, which makes aortic measurements on NCCT feasible.</description><subject>Algorithms</subject><subject>Aorta</subject><subject>Aorta - diagnostic imaging</subject><subject>Aorta segmentation</subject><subject>Aortic Diseases</subject><subject>Body measurements</subject><subject>Cancer screening</subject><subject>Chest</subject><subject>Coders</subject><subject>Computed tomography</subject><subject>Coronary vessels</subject><subject>Decoders</subject><subject>Deep learning</subject><subject>Early Detection of Cancer</subject><subject>Health risks</subject><subject>Humans</subject><subject>Hypertension</subject><subject>Image contrast</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>Image segmentation</subject><subject>Interfaces</subject><subject>Landmark localization</subject><subject>Localization</subject><subject>Lung cancer</subject><subject>Lung Neoplasms</subject><subject>Medical imaging</subject><subject>Medical screening</subject><subject>Metric space</subject><subject>Morphology</subject><subject>Multitask learning</subject><subject>Noncontrast CT</subject><subject>Simultaneous discrimination learning</subject><subject>Sinuses</subject><subject>Thorax</subject><subject>Tomography, X-Ray Computed - methods</subject><subject>Vascular diseases</subject><subject>Veins & arteries</subject><issn>0010-4825</issn><issn>1879-0534</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNqFkc-OFCEQxonRuOPqKxgSL156LGiYoY86Wf8km3hwPROarl6ZoWEEejbri_i60pndmHjxRKr4FR_1fYRQBmsGbPNuv7ZxOvYuTjisOfC2trcA_AlZMbXtGpCteEpWAAwaobi8IC9y3gOAgBaek4t2WzHWblbk9ze8nTAUamIqhpowUB-t8e4XUl-ryaRDptlNsy8mYJyzv6cx0BCDjaEkkwvd3dA5u3BLDV0wV0w-UI8mhaU5JjPhXUwHOsZEj6a4KpfpnSs_4lxoxhMmpCeT7exNooPLaDK-JM9G4zO-ejgvyfePVze7z831109fdu-vGyskLw1jYuiNQGwF7wc2AhMgoVe8k6x60AIfeiEGKxV0IGW3NYKrkfVWdT1w07WX5O353WOKP2fMRU8uW_T-vKzmilUhyZmq6Jt_0H2cU6i_WyjZCb5RbaXUmbIp5pxw1Mfkqov3moFewtN7_Tc8vYSnz-HV0dcPAnO_3D0OPqZVgQ9nAKsjJ4dJZ1vdtDi4hLboIbr_q_wBGB-ydA</recordid><startdate>202306</startdate><enddate>202306</enddate><creator>Yang, Jinrong</creator><creator>Li, Xiang</creator><creator>Cheng, Jie-Zhi</creator><creator>Xue, Zhong</creator><creator>Shi, Feng</creator><creator>Ji, Yuqing</creator><creator>Wang, Xuechun</creator><creator>Yang, Fan</creator><general>Elsevier Ltd</general><general>Elsevier Limited</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AL</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>JQ2</scope><scope>K7-</scope><scope>K9.</scope><scope>KB0</scope><scope>LK8</scope><scope>M0N</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>M7Z</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-5718-9420</orcidid><orcidid>https://orcid.org/0000-0002-6394-7408</orcidid></search><sort><creationdate>202306</creationdate><title>Segment aorta and localize landmarks simultaneously on noncontrast CT using a multitask learning framework for patients without severe vascular disease</title><author>Yang, Jinrong ; Li, Xiang ; Cheng, Jie-Zhi ; Xue, Zhong ; Shi, Feng ; Ji, Yuqing ; Wang, Xuechun ; Yang, Fan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c452t-114dba4ee342bd1f014050b82951534302db44dc580905597a428f1bc89b02a93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Algorithms</topic><topic>Aorta</topic><topic>Aorta - diagnostic imaging</topic><topic>Aorta segmentation</topic><topic>Aortic Diseases</topic><topic>Body measurements</topic><topic>Cancer screening</topic><topic>Chest</topic><topic>Coders</topic><topic>Computed tomography</topic><topic>Coronary vessels</topic><topic>Decoders</topic><topic>Deep learning</topic><topic>Early Detection of Cancer</topic><topic>Health risks</topic><topic>Humans</topic><topic>Hypertension</topic><topic>Image contrast</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>Image segmentation</topic><topic>Interfaces</topic><topic>Landmark localization</topic><topic>Localization</topic><topic>Lung cancer</topic><topic>Lung Neoplasms</topic><topic>Medical imaging</topic><topic>Medical screening</topic><topic>Metric space</topic><topic>Morphology</topic><topic>Multitask learning</topic><topic>Noncontrast CT</topic><topic>Simultaneous discrimination learning</topic><topic>Sinuses</topic><topic>Thorax</topic><topic>Tomography, X-Ray Computed - methods</topic><topic>Vascular diseases</topic><topic>Veins & arteries</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yang, Jinrong</creatorcontrib><creatorcontrib>Li, Xiang</creatorcontrib><creatorcontrib>Cheng, Jie-Zhi</creatorcontrib><creatorcontrib>Xue, Zhong</creatorcontrib><creatorcontrib>Shi, Feng</creatorcontrib><creatorcontrib>Ji, Yuqing</creatorcontrib><creatorcontrib>Wang, Xuechun</creatorcontrib><creatorcontrib>Yang, Fan</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nursing & Allied Health Database</collection><collection>ProQuest_Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Computing Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Computer Science Collection</collection><collection>Computer science database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>ProQuest Biological Science Collection</collection><collection>Computing Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>ProQuest_Research Library</collection><collection>ProQuest Biological Science Journals</collection><collection>Biochemistry Abstracts 1</collection><collection>Research Library (Corporate)</collection><collection>Nursing & Allied Health Premium</collection><collection>ProQuest advanced technologies & aerospace journals</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Computers in biology and medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yang, Jinrong</au><au>Li, Xiang</au><au>Cheng, Jie-Zhi</au><au>Xue, Zhong</au><au>Shi, Feng</au><au>Ji, Yuqing</au><au>Wang, Xuechun</au><au>Yang, Fan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Segment aorta and localize landmarks simultaneously on noncontrast CT using a multitask learning framework for patients without severe vascular disease</atitle><jtitle>Computers in biology and medicine</jtitle><addtitle>Comput Biol Med</addtitle><date>2023-06</date><risdate>2023</risdate><volume>160</volume><spage>107002</spage><epage>107002</epage><pages>107002-107002</pages><artnum>107002</artnum><issn>0010-4825</issn><eissn>1879-0534</eissn><abstract>Non-contrast chest CT is widely used for lung cancer screening, and its images carry potential information of the thoracic aorta. The morphological assessment of the thoracic aorta may have potential value in the presymptomatic detection of thoracic aortic-related diseases and the risk prediction of future adverse events. However, due to low vasculature contrast in such images, visual assessment of aortic morphology is challenging and highly depends on physicians’ experience.
The main objective of this study is to propose a novel multi-task framework based on deep learning for simultaneous aortic segmentation and localization of key landmarks on unenhanced chest CT. The secondary objective is to use the algorithm to measure quantitative features of thoracic aorta morphology.
The proposed network is composed of two subnets to carry out segmentation and landmark detection, respectively. The segmentation subnet aims to demarcate the aortic sinuses of the Valsalva, aortic trunk and aortic branches, whereas the detection subnet is devised to locate five landmarks on the aorta to facilitate morphology measures. The networks share a common encoder and run decoders in parallel, taking full advantage of the synergy of the segmentation and landmark detection tasks. Furthermore, the volume of interest (VOI) module and the squeeze-and-excitation (SE) block with attention mechanisms are incorporated to further boost the capability of feature learning.
Benefiting from the multitask framework, we achieved a mean Dice score of 0.95, average symmetric surface distance of 0.53 mm, Hausdorff distance of 2.13 mm for aortic segmentation, and mean square error (MSE) of 3.23 mm for landmark localization in 40 testing cases.
We proposed a multitask learning framework which can perform segmentation of the thoracic aorta and localization of landmarks simultaneously and achieved good results. It can support quantitative measurement of aortic morphology for further analysis of aortic diseases, such as hypertension.
In this paper, an automatic multitask learning framework (M-SL) is proposed for simultaneous aorta segmentation and landmark localization in NCCT (noncontrast CT). Our main contributions are summarized as follows:•A multitask learning framework is proposed for simultaneous aorta segmentation and landmark localization.•This parallel and end-to-end learning strategy can take advantage of the synergy of segmentation and landmark detection.•The volume of interest (VOI) module and squeeze-and-excitation (SE) block are incorporated to boost the capability.•The proposed framework has been applied and validated on NCCT, which makes aortic measurements on NCCT feasible.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>37187136</pmid><doi>10.1016/j.compbiomed.2023.107002</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-5718-9420</orcidid><orcidid>https://orcid.org/0000-0002-6394-7408</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0010-4825 |
ispartof | Computers in biology and medicine, 2023-06, Vol.160, p.107002-107002, Article 107002 |
issn | 0010-4825 1879-0534 |
language | eng |
recordid | cdi_proquest_miscellaneous_2814525218 |
source | ScienceDirect Journals |
subjects | Algorithms Aorta Aorta - diagnostic imaging Aorta segmentation Aortic Diseases Body measurements Cancer screening Chest Coders Computed tomography Coronary vessels Decoders Deep learning Early Detection of Cancer Health risks Humans Hypertension Image contrast Image Processing, Computer-Assisted - methods Image segmentation Interfaces Landmark localization Localization Lung cancer Lung Neoplasms Medical imaging Medical screening Metric space Morphology Multitask learning Noncontrast CT Simultaneous discrimination learning Sinuses Thorax Tomography, X-Ray Computed - methods Vascular diseases Veins & arteries |
title | Segment aorta and localize landmarks simultaneously on noncontrast CT using a multitask learning framework for patients without severe vascular disease |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-02T11%3A15%3A00IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Segment%20aorta%20and%20localize%20landmarks%20simultaneously%20on%20noncontrast%20CT%20using%20a%20multitask%20learning%20framework%20for%20patients%20without%20severe%20vascular%20disease&rft.jtitle=Computers%20in%20biology%20and%20medicine&rft.au=Yang,%20Jinrong&rft.date=2023-06&rft.volume=160&rft.spage=107002&rft.epage=107002&rft.pages=107002-107002&rft.artnum=107002&rft.issn=0010-4825&rft.eissn=1879-0534&rft_id=info:doi/10.1016/j.compbiomed.2023.107002&rft_dat=%3Cproquest_cross%3E2815942683%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c452t-114dba4ee342bd1f014050b82951534302db44dc580905597a428f1bc89b02a93%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2815942683&rft_id=info:pmid/37187136&rfr_iscdi=true |