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De Novo Transcriptomic and Life-History Responses of Moina Micrura Under Stress Environment Conditions
Moina micrura represents a promising model species for ecological and ecotoxicological investigations in tropical freshwater ecosystems. Illumina NovaSeq™ 6000 sequencing was employed in this study to analyze M. micrura across three distinct developmental stages: juvenile, adult, and male. Current s...
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| Published in: | Marine biotechnology (New York, N.Y.) N.Y.), 2023-06, Vol.25 (3), p.473-487 |
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| cites | cdi_FETCH-LOGICAL-c375t-87b4ff3a46c98a07a5e7a7c797007a999a55c4fdec776a8e42c02ba621d436bb3 |
| container_end_page | 487 |
| container_issue | 3 |
| container_start_page | 473 |
| container_title | Marine biotechnology (New York, N.Y.) |
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| creator | Razak, Muhammad Raznisyafiq Aris, Ahmad Zaharin Yusoff, Fatimah Md Yusof, Zetty Norhana Balia Kim, Sang Don Kim, Kyoung Woong |
| description | Moina micrura
represents a promising model species for ecological and ecotoxicological investigations in tropical freshwater ecosystems. Illumina NovaSeq™ 6000 sequencing was employed in this study to analyze
M. micrura
across three distinct developmental stages: juvenile, adult, and male. Current study successfully annotated 51,547 unigenes (73.11%) derived from seven (7) different databases. A total of 554 genes were found to be significantly upregulated, while 452 genes showed significant downregulation between juvenile and male. Moreover, 1001 genes were upregulated, whereas 830 genes exhibited downregulation between the adult and male. Analysis of differentially expressed genes revealed upregulation of chitin, cuticle, myosin (MYO), mitogen-activated protein kinases (MAPK), fibrillin (FBN), cytochrome (CYP), glutathione s-transferase (GST), vitellogenin (VTG), acetylcholinesterase (AChE), and transforming growth factor beta (TGFB) under unfavorable environmental conditions (male), as compared to favorable environmental conditions (juveniles and adults). These alterations in gene expression significantly impact the phenological and life-history traits of
M. micrura
. Furthermore, the upregulation of hemoglobin (HMB), doublesex (DSX), juvenile hormone analogs (JHA), heat shock protein (HSP), and methyltransferase (METT) genes in males initiates the sex-switching effects observed in
M. micrura
. These findings hold substantial value for researchers interested in determining
M. micrura
sequences for future investigations of gene expression and comparative reproductive genome analysis within the Moina genus and cladoceran families. |
| doi_str_mv | 10.1007/s10126-023-10220-9 |
| format | article |
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represents a promising model species for ecological and ecotoxicological investigations in tropical freshwater ecosystems. Illumina NovaSeq™ 6000 sequencing was employed in this study to analyze
M. micrura
across three distinct developmental stages: juvenile, adult, and male. Current study successfully annotated 51,547 unigenes (73.11%) derived from seven (7) different databases. A total of 554 genes were found to be significantly upregulated, while 452 genes showed significant downregulation between juvenile and male. Moreover, 1001 genes were upregulated, whereas 830 genes exhibited downregulation between the adult and male. Analysis of differentially expressed genes revealed upregulation of chitin, cuticle, myosin (MYO), mitogen-activated protein kinases (MAPK), fibrillin (FBN), cytochrome (CYP), glutathione s-transferase (GST), vitellogenin (VTG), acetylcholinesterase (AChE), and transforming growth factor beta (TGFB) under unfavorable environmental conditions (male), as compared to favorable environmental conditions (juveniles and adults). These alterations in gene expression significantly impact the phenological and life-history traits of
M. micrura
. Furthermore, the upregulation of hemoglobin (HMB), doublesex (DSX), juvenile hormone analogs (JHA), heat shock protein (HSP), and methyltransferase (METT) genes in males initiates the sex-switching effects observed in
M. micrura
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M. micrura
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represents a promising model species for ecological and ecotoxicological investigations in tropical freshwater ecosystems. Illumina NovaSeq™ 6000 sequencing was employed in this study to analyze
M. micrura
across three distinct developmental stages: juvenile, adult, and male. Current study successfully annotated 51,547 unigenes (73.11%) derived from seven (7) different databases. A total of 554 genes were found to be significantly upregulated, while 452 genes showed significant downregulation between juvenile and male. Moreover, 1001 genes were upregulated, whereas 830 genes exhibited downregulation between the adult and male. Analysis of differentially expressed genes revealed upregulation of chitin, cuticle, myosin (MYO), mitogen-activated protein kinases (MAPK), fibrillin (FBN), cytochrome (CYP), glutathione s-transferase (GST), vitellogenin (VTG), acetylcholinesterase (AChE), and transforming growth factor beta (TGFB) under unfavorable environmental conditions (male), as compared to favorable environmental conditions (juveniles and adults). These alterations in gene expression significantly impact the phenological and life-history traits of
M. micrura
. Furthermore, the upregulation of hemoglobin (HMB), doublesex (DSX), juvenile hormone analogs (JHA), heat shock protein (HSP), and methyltransferase (METT) genes in males initiates the sex-switching effects observed in
M. micrura
. These findings hold substantial value for researchers interested in determining
M. micrura
sequences for future investigations of gene expression and comparative reproductive genome analysis within the Moina genus and cladoceran families.</description><subject>Acetylcholinesterase</subject><subject>Acetylcholinesterase - genetics</subject><subject>Animals</subject><subject>Aquatic ecosystems</subject><subject>Biomedical and Life Sciences</subject><subject>Chitin</subject><subject>Cladocera - genetics</subject><subject>Cytochromes</subject><subject>Developmental stages</subject><subject>Down-regulation</subject><subject>Ecosystem</subject><subject>Engineering</subject><subject>Environmental conditions</subject><subject>Epicuticle</subject><subject>Fibrillin</subject><subject>Freshwater</subject><subject>Freshwater & Marine Ecology</subject><subject>Freshwater ecosystems</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Genes</subject><subject>Genomes</subject><subject>Glutathione</subject><subject>Glutathione 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Novo Transcriptomic and Life-History Responses of Moina Micrura Under Stress Environment Conditions</title><author>Razak, Muhammad Raznisyafiq ; Aris, Ahmad Zaharin ; Yusoff, Fatimah Md ; Yusof, Zetty Norhana Balia ; Kim, Sang Don ; Kim, Kyoung Woong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-87b4ff3a46c98a07a5e7a7c797007a999a55c4fdec776a8e42c02ba621d436bb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Acetylcholinesterase</topic><topic>Acetylcholinesterase - genetics</topic><topic>Animals</topic><topic>Aquatic ecosystems</topic><topic>Biomedical and Life Sciences</topic><topic>Chitin</topic><topic>Cladocera - genetics</topic><topic>Cytochromes</topic><topic>Developmental stages</topic><topic>Down-regulation</topic><topic>Ecosystem</topic><topic>Engineering</topic><topic>Environmental 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biotechnology (New York, N.Y.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Razak, Muhammad Raznisyafiq</au><au>Aris, Ahmad Zaharin</au><au>Yusoff, Fatimah Md</au><au>Yusof, Zetty Norhana Balia</au><au>Kim, Sang Don</au><au>Kim, Kyoung Woong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>De Novo Transcriptomic and Life-History Responses of Moina Micrura Under Stress Environment Conditions</atitle><jtitle>Marine biotechnology (New York, N.Y.)</jtitle><stitle>Mar Biotechnol</stitle><addtitle>Mar Biotechnol (NY)</addtitle><date>2023-06-01</date><risdate>2023</risdate><volume>25</volume><issue>3</issue><spage>473</spage><epage>487</epage><pages>473-487</pages><issn>1436-2228</issn><eissn>1436-2236</eissn><abstract>Moina micrura
represents a promising model species for ecological and ecotoxicological investigations in tropical freshwater ecosystems. Illumina NovaSeq™ 6000 sequencing was employed in this study to analyze
M. micrura
across three distinct developmental stages: juvenile, adult, and male. Current study successfully annotated 51,547 unigenes (73.11%) derived from seven (7) different databases. A total of 554 genes were found to be significantly upregulated, while 452 genes showed significant downregulation between juvenile and male. Moreover, 1001 genes were upregulated, whereas 830 genes exhibited downregulation between the adult and male. Analysis of differentially expressed genes revealed upregulation of chitin, cuticle, myosin (MYO), mitogen-activated protein kinases (MAPK), fibrillin (FBN), cytochrome (CYP), glutathione s-transferase (GST), vitellogenin (VTG), acetylcholinesterase (AChE), and transforming growth factor beta (TGFB) under unfavorable environmental conditions (male), as compared to favorable environmental conditions (juveniles and adults). These alterations in gene expression significantly impact the phenological and life-history traits of
M. micrura
. Furthermore, the upregulation of hemoglobin (HMB), doublesex (DSX), juvenile hormone analogs (JHA), heat shock protein (HSP), and methyltransferase (METT) genes in males initiates the sex-switching effects observed in
M. micrura
. These findings hold substantial value for researchers interested in determining
M. micrura
sequences for future investigations of gene expression and comparative reproductive genome analysis within the Moina genus and cladoceran families.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>37310522</pmid><doi>10.1007/s10126-023-10220-9</doi><tpages>15</tpages></addata></record> |
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| ispartof | Marine biotechnology (New York, N.Y.), 2023-06, Vol.25 (3), p.473-487 |
| issn | 1436-2228 1436-2236 |
| language | eng |
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| source | ABI/INFORM global; Springer Link |
| subjects | Acetylcholinesterase Acetylcholinesterase - genetics Animals Aquatic ecosystems Biomedical and Life Sciences Chitin Cladocera - genetics Cytochromes Developmental stages Down-regulation Ecosystem Engineering Environmental conditions Epicuticle Fibrillin Freshwater Freshwater & Marine Ecology Freshwater ecosystems Gene expression Gene Expression Profiling Genes Genomes Glutathione Glutathione transferase Growth factors Haemoglobin Heat shock Heat shock proteins Hemoglobin Hormones Humans Inland water environment Juvenile hormones Juveniles Kinases Life history Life Sciences Male Males MAP kinase Methyltransferase Microbiology Moina Moina micrura Myosin Proteins Transcriptome Transcriptomics Transforming growth factor-b Vitellogenin Zoology |
| title | De Novo Transcriptomic and Life-History Responses of Moina Micrura Under Stress Environment Conditions |
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