Comparative mitochondrial genomics of American nectar-feeding long-nosed bats Leptonycteris spp. with insights into the phylogeny of the family Phyllostomidae

• Published in: Gene 2023-08, Vol.879, p.147588-147588, Article 147588
• Main Authors: Barrera, Carlos A., Ortega, Jorge, Gutierrez-Guerrero, Yocelyn T., Baeza, J.A.
• Format: Article
• Language: English
• Subjects: Animals; Chiroptera - genetics; Control region; Genome, Mitochondrial - genetics; Genomics; Leptonycteris; Microsatellites; Mitochondria - genetics; Mitogenome; Phylogeny; Plant Nectar; RNA, Transfer - genetics; Secondary structures; Tandem repeats
• ISSN: 0378-1119; 1879-0038
• DOI: 10.1016/j.gene.2023.147588

•Mitochondrial genomes of all bats in the genus Leptonycteris were assembled and characterized in detail.•Mitochondrial genome synteny is identical to that of other phyllostomid bats.•Phylomitogenomics revealed that Leptonycteris is monophyletic.•Leptonycteris is more closely related to Glossophaga in the subfamily Glossophaginae. Among leaf-nosed bats (family Phyllostomidae), the genus Leptonycteris (subfamily Glossophaginae), contains three migratory and obligate nectar-dwelling species of great ecological and economic importance; the greater long-nosed bat L. nivalis, the lesser long-nosed bat L. yerbabuenae, and the southern long-nosed bat L. curasoae. According to the IUCN, the three species are categorized as ‘vulnerable’, ‘endangered’, and ‘near threatened’, respectively. In this study, we assembled and characterized in detail the mitochondrial genome of Leptonycteris spp. and examined the phylogenetic position of this genus in the family Phyllostomidae based on protein coding genes (PCGs). The mitogenomes of L. nivalis, L. curasoae, and L. yerbabuenae are 16,708, 16,758, and 16,729 bp in length and each encode 13 PCGs, 22 transfer RNA genes, 2 rRNA genes, and a putative control region (CR). Mitochondrial gene order is identical to that reported before for the family Phyllostomidae. All tRNAs exhibit a ‘cloverleaf’ secondary structure, except tRNA-Serine-1 that is missing the DHU arm in the three species. All PCGs are exposed to purifying selection with atp8 experiencing the most relaxed purifying selection as the ω ratio was higher for this gene compared to the other PCGs in each species. The CR of each species contains three functional domains: extended termination associated sequence (ETAS), Central, and conserved sequence block domain (CSB). A phylomitogenomic analysis revealed that Leptonycteris is monophyletic and most closely related to the genus Glossophaga. The analysis also supported the monophyly of the family Glossophaginae in the speciose family Phyllostomidae. The mitochondria characterization of these species provides relevant information to develop molecular markers for conservation purposes.