Fast and User-Friendly Detection of Flatfish Species (Pleuronectes platessa and Solea solea) via Loop-Mediated Isothermal Amplification (LAMP)

• Published in: Journal of agricultural and food chemistry 2023-10, Vol.71 (40), p.14795-14805
• Main Authors: Wax, Nils, Pförtner, Laura Sophie, Holz, Nathalie, Sterzl, Svenja, Melnik, Melina, Kappel, Kristina, Bade, Patrizia, Schröder, Ute, Haase, Ilka, Fritsche, Jan, Fischer, Markus
• Format: Article
• Language: English
• Subjects: cross reaction; cytochrome b; DNA; DNA barcoding; Europe; fish; food chemistry; genes; loop-mediated isothermal amplification; New Analytical Methods; nontarget organisms; oligodeoxyribonucleotides; Pleuronectes platessa; Solea senegalensis; Solea solea
• ISSN: 0021-8561; 1520-5118; 1520-5118
• DOI: 10.1021/acs.jafc.3c03917

The detection of a Cytochrome b gene (cytb) for species differentiation in fish is intensively used. A fast alternative to expensive and time-consuming DNA barcoding is loop-mediated isothermal amplification (LAMP) in combination with efficient readout systems. For this reason, we developed LAMP assays for rapid species detection of Pleuronectes platessa and Solea solea, two economically important flatfish species in Europe that are prone to mislabeling. Species-specific primer sets targeting cytb were designed, and LAMP assays were optimized. With the optimized LAMP assays, we were able to detect up to 0.1 and 0.01 ng of target DNA of P. platessa and S. solea, respectively, and in each case up to 1% (w/w) of target species in mixtures with nontarget species. For future on-site detection, a lateral flow assay and a pocket-sized lab-on-phone assay were used as readout systems. The lab-on-phone assay with the S. solea specific primer set revealed cross-reactivity to Solea senegalensis. The assay targeting P. platessa proved to be highly specific. Both assays could be performed within 45 min and provided rapid and easy detection of fish species.