Gender-specific lncRNA-miRNA-mRNA regulatory network to reveal potential genes for primary open-angle glaucoma

• Published in: Experimental eye research 2023-11, Vol.236, p.109668-109668, Article 109668
• Main Authors: Chen, Jingxia, Zhang, Chu, Peng, Jinyan, Tang, Cuicui, Zhang, Chunli, Zhang, Mengyi, Zou, Xiulan, Zou, Yuping
• Format: Article
• Language: English
• Subjects: Biomarkers; Competing endogenous RNA (ceRNA); Primary open-angle glaucoma; Protein-protein interaction; Weighted gene co-expression network analysis
• ISSN: 0014-4835; 1096-0007
• DOI: 10.1016/j.exer.2023.109668

Investigation of biomarkers may facilitate understanding the mechanisms of primary open-angle glaucoma (POAG) and developing therapeutic targets. This study aimed to identify potential genes based on competing endogenous RNA (ceRNA) network for POAG. Based on long noncoding RNAs (lncRNAs), microRNAs (miRNAs) and messenger RNAs (mRNAs) from the Gene Expression Omnibus (GEO) database, we identified differential expressed lncRNAs (DELs), differential expressed miRNAs (DEMis) and differential expressed mRNAs (DEMs) and then constructed a ceRNA network. Through weighted gene co-expression network analysis (WGCNA), we identified gender-specific genes for gender-associated ceRNA network construction, followed by the protein-protein interaction (PPI) network and functional enrichment analysis to screen hub genes and reveal their functions. The expression levels of hub genes were measured in steroid-induced ocular hypertension (SIOH) mice. A total of 175 DELs, 727 DEMs and 45 DEMis were screened between control and POAG samples. Seven modules were identified through WGCNA and one module was associated with gender of POAG patients. We discovered 41 gender-specific genes for gender-associated ceRNA construction and then identified 8 genes (NAV3, C1QB, RXRB, P2RY4, ADAM15, VAV3, ZNF207 and TOP1), which were enriched in cell cycle-related pathways and immune-related pathways. C1QB, RXRB, Top1 and ZNF207 were highly interacted with other proteins. The expression levels of NAV3 and C1QB were downregulated in SIOH, while the levels of RXRB, P2RY4, ADAM15, VAV3, ZNF207 and TOP1 were upregulated in SIOH. This study identifies hub genes associated with the pathogenesis of gender-specific POAG and provides potential biomarkers for POAG. •We established gender-related lncRNA-miRNA-mRNA network to identify 8 potential genes involved in POAG.•These potential genes were enriched in cell cycle procession and immune-related pathways.•This study might reveal the underlying pathogenesis of POAG and provid biomarkers for POAG treatment.