Identification, activity and delivery of new LysFA67 endolysin to target cheese spoilage Clostridium tyrobutyricum

• Published in: Food microbiology 2024-02, Vol.117, p.104401, Article 104401
• Main Authors: Sánchez, Carmen, Garde, Sonia, Landete, José María, Calzada, Javier, Baker, Dave J., Evans, Rhiannon, Narbad, Arjan, Mayer, Melinda J., Ávila, Marta
• Format: Article
• Language: English
• Subjects: Antimicrobials; Bacteriophages; Bacteriophages - genetics; Cheese - microbiology; Clostridium - metabolism; Clostridium tyrobutyricum; Clostridium tyrobutyricum - genetics; Clostridium tyrobutyricum - metabolism; Endolysin; Endopeptidases - genetics; Endopeptidases - metabolism; Lactococcus; Phage genome
• ISSN: 0740-0020; 1095-9998; 1095-9998
• DOI: 10.1016/j.fm.2023.104401

Bacteriophages and their endolysins are potential biocontrol agents for the anaerobic spoilage organism Clostridium tyrobutyricum, which causes cheese late blowing defect. This study sequenced and compared the genomes of eight bacteriophages from Spanish dairy farms that were active against C. tyrobutyricum, to identify novel species and phage proteins. Phages vB_CtyS-FA67 and vB_CtyS-FA70 shared >94% intergenomic similarity to each other but neither phage had significant similarity to ΦCTP1, the unique C. tyrobutyricum phage sequenced to date. Taxonomic analysis indicated that both phages belong to the class Caudoviricetes and are related to dsDNA viruses with long non-contractile tails. vB_CtyS-FA67 had no other close relatives and encoded a novel endolysin, LysFA67, predicted to belong to the glycoside hydrolase GH24 family. LysFA67 lysed 93% of C. tyrobutyricum cells after 4 min in turbidity reduction assays, retaining lytic activity at pHs 4.2–8.1 and at 30–45 °C. The endolysin remained stable after 30 d storage at 4, 12 and 25 °C, while its activity decreased at −20 °C. LysFA67 lysed several clostridia species, while common dairy bacteria were not affected. Lactococcus lactis INIA 437, used as a cheese starter, was engineered to deliver LysFA67 and red fluorescent LysFA67-mCherry to dairy products. We demonstrated that these engineered strains were able to maintain lytic activity and fluorescence without affecting their technological properties in milk. [Display omitted] •Clostridium tyrobutyricum phages from dairy environments were sequenced and compared.•Phages FA67 and FA70 have no close relatives.•LysFA67 endolysin from phage FA67 causes high and rapid lysis of C. tyrobutyricum.•LysFA67 and engineered L. lactis are promising for use as a biocontrol agents.