Complete mitochondrial genome of critically endangered catfish Hemibagrus punctatus (Jerdon, 1849) and comparative analysis for insights into the phylogeny of hemibagrids through mitogenomic approach

• Published in: Molecular biology reports 2024-12, Vol.51 (1), p.601-601, Article 601
• Main Authors: Chowdhury, Labrechai Mog, PR, Divya, Mandal, Sangeeta, Ravi, Charan, Mohindra, Vindhya, Sarkar, U. K.
• Format: Article
• Language: English
• Subjects: Animal Anatomy; Animal Biochemistry; Animals; Bagridae; Biomedical and Life Sciences; Catfishes - classification; Catfishes - genetics; Chloroform; Comparative analysis; Developmental biology; DNA, Mitochondrial - genetics; Endangered Species; Evolution; Evolution, Molecular; Genome, Mitochondrial - genetics; Genomes; Hemibagrus punctatus; Histology; India; Isopentyl alcohol; Life Sciences; Mitochondria; Morphology; Original Article; Phylogenetics; Phylogeny; Population decline; RNA, Transfer - genetics; Sequence Analysis, DNA - methods
• ISSN: 0301-4851; 1573-4978
• DOI: 10.1007/s11033-024-09490-w

Background Hemibagrus punctatus (Jerdon, 1849) is a critically endangered bagrid catfish endemic to the Western Ghats of India, whose population is declining due to anthropogenic activities. The current study aims to compare the mitogenome of H. punctatus with that of other Bagrid catfishes and provide insights into their evolutionary relationships. Methods and Results Samples were collected from Hemmige Karnataka, India. In the present study, the mitogenome of H . punctatus was successfully assembled, and its phylogenetic relationships with other Bagridae species were studied. The total genomic DNA of samples was extracted following the phenol–chloroform isoamyl alcohol method. Samples were sequenced, and the Illumina paired-end reads were assembled to a contig length of 16,517 bp. The mitochondrial genome was annotated using MitoFish and MitoAnnotator (Iwasaki et al ., 2013). A robust phylogenetic analysis employing NJ (Maximum composite likelihood) and ASAP methods supports the classification of H. punctatus within the Bagridae family, which validates the taxonomic status of this species. In conclusion, this research enriches our understanding of H. punctatus mitogenome, shedding light on its evolutionary dynamics within the Bagridae family and contributing to the broader knowledge of mitochondrial genes in the context of evolutionary biology. Conclusions The study’s findings contribute to a better understanding of the mitogenome of H . punctatus and provide insights into the evolutionary relationships within other Hemibagrids.