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Protocol to record and analyze primate leaping in three dimensions in the wild
Several studies comparing primate locomotion under lab versus field conditions have shown the importance of implementing both types of studies, as each has their advantages and disadvantages. However, three‐dimensional (3D) motion capture of primates has been challenging under natural conditions. In...
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Published in: | Journal of experimental zoology. Part A, Ecological and integrative physiology Ecological and integrative physiology, 2024-11, Vol.341 (9), p.965-976 |
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container_title | Journal of experimental zoology. Part A, Ecological and integrative physiology |
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creator | Janisch, Judith Kirven, Jack Schapker, Nicole Myers, Lydia C. Shapiro, Liza J. Young, Jesse W. |
description | Several studies comparing primate locomotion under lab versus field conditions have shown the importance of implementing both types of studies, as each has their advantages and disadvantages. However, three‐dimensional (3D) motion capture of primates has been challenging under natural conditions. In this study, we provide a detailed protocol on how to collect 3D biomechanical data on primate leaping in their natural habitat that can be widely implemented. To record primate locomotion in the dense forest we use modified GoPro Hero Black cameras with zoom lenses that can easily be carried around and set up on tripods. We outline details on how to obtain camera calibrations at greater heights and how to process the collected data using the MATLAB camera calibration app and the motion tracking software DLTdv8a. We further developed a new MATLAB application “WildLeap3D” to generate biomechanical performance metrics from the derived x, y, z coordinates of the leaps. We provide details on how to collect data on support diameter, compliance, and orientation, and combine these with the jumps to study locomotor performance in an ecological context. We successfully reconstructed leaps of wild primates in the 3D space under natural conditions and provided data on four representative leaps. We provide exemplar data on primate velocity and acceleration during a leap and show how our protocol can be used to analyze segmental kinematics. This study will help to make motion capture of freely moving animals more accessible and help further our knowledge about animal locomotion and movement.
Research Highlights
The workflow and equipment described make motion capture of wild animals more accessible, facilitating important studies.
We provide four example leaps of wild primates in different species, variable environments and several types of jumps. |
doi_str_mv | 10.1002/jez.2849 |
format | article |
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Research Highlights
The workflow and equipment described make motion capture of wild animals more accessible, facilitating important studies.
We provide four example leaps of wild primates in different species, variable environments and several types of jumps.</description><identifier>ISSN: 2471-5638</identifier><identifier>ISSN: 2471-5646</identifier><identifier>EISSN: 2471-5646</identifier><identifier>DOI: 10.1002/jez.2849</identifier><identifier>PMID: 38973531</identifier><language>eng</language><publisher>United States: Wiley Subscription Services, Inc</publisher><subject>Acceleration ; Accessibility ; Animals ; Biomechanical engineering ; Biomechanical Phenomena ; Biomechanics ; Cameras ; Data analysis ; Data collection ; Kinematics ; leaping ; Locomotion ; Locomotion - physiology ; Locomotor activity ; Matlab ; Monkeys & apes ; Motion capture ; Movement ; Performance measurement ; primate locomotion ; Primates ; Primates - physiology ; Three dimensional motion ; Tripods ; Workflow ; Zoom lenses</subject><ispartof>Journal of experimental zoology. Part A, Ecological and integrative physiology, 2024-11, Vol.341 (9), p.965-976</ispartof><rights>2024 The Author(s). published by Wiley Periodicals LLC.</rights><rights>2024 The Author(s). Journal of Experimental Zoology Part A: Ecological and Integrative Physiology published by Wiley Periodicals LLC.</rights><rights>2024. This article is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c1899-a03778458d606220ad29dcd1db92525ebc3c3e5116313eb82cee38142ed85ff13</cites><orcidid>0000-0003-3300-6292 ; 0000-0001-9138-5433</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,778,782,27911,27912</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38973531$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Janisch, Judith</creatorcontrib><creatorcontrib>Kirven, Jack</creatorcontrib><creatorcontrib>Schapker, Nicole</creatorcontrib><creatorcontrib>Myers, Lydia C.</creatorcontrib><creatorcontrib>Shapiro, Liza J.</creatorcontrib><creatorcontrib>Young, Jesse W.</creatorcontrib><title>Protocol to record and analyze primate leaping in three dimensions in the wild</title><title>Journal of experimental zoology. Part A, Ecological and integrative physiology</title><addtitle>J Exp Zool A Ecol Integr Physiol</addtitle><description>Several studies comparing primate locomotion under lab versus field conditions have shown the importance of implementing both types of studies, as each has their advantages and disadvantages. However, three‐dimensional (3D) motion capture of primates has been challenging under natural conditions. In this study, we provide a detailed protocol on how to collect 3D biomechanical data on primate leaping in their natural habitat that can be widely implemented. To record primate locomotion in the dense forest we use modified GoPro Hero Black cameras with zoom lenses that can easily be carried around and set up on tripods. We outline details on how to obtain camera calibrations at greater heights and how to process the collected data using the MATLAB camera calibration app and the motion tracking software DLTdv8a. We further developed a new MATLAB application “WildLeap3D” to generate biomechanical performance metrics from the derived x, y, z coordinates of the leaps. We provide details on how to collect data on support diameter, compliance, and orientation, and combine these with the jumps to study locomotor performance in an ecological context. We successfully reconstructed leaps of wild primates in the 3D space under natural conditions and provided data on four representative leaps. We provide exemplar data on primate velocity and acceleration during a leap and show how our protocol can be used to analyze segmental kinematics. This study will help to make motion capture of freely moving animals more accessible and help further our knowledge about animal locomotion and movement.
Research Highlights
The workflow and equipment described make motion capture of wild animals more accessible, facilitating important studies.
We provide four example leaps of wild primates in different species, variable environments and several types of jumps.</description><subject>Acceleration</subject><subject>Accessibility</subject><subject>Animals</subject><subject>Biomechanical engineering</subject><subject>Biomechanical Phenomena</subject><subject>Biomechanics</subject><subject>Cameras</subject><subject>Data analysis</subject><subject>Data collection</subject><subject>Kinematics</subject><subject>leaping</subject><subject>Locomotion</subject><subject>Locomotion - physiology</subject><subject>Locomotor activity</subject><subject>Matlab</subject><subject>Monkeys & apes</subject><subject>Motion capture</subject><subject>Movement</subject><subject>Performance measurement</subject><subject>primate locomotion</subject><subject>Primates</subject><subject>Primates - physiology</subject><subject>Three dimensional motion</subject><subject>Tripods</subject><subject>Workflow</subject><subject>Zoom lenses</subject><issn>2471-5638</issn><issn>2471-5646</issn><issn>2471-5646</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><recordid>eNp1kFtLwzAUgIMobsyBv0ACvvjSmZP0kj7KmDdEfdAXX0qbnGpH28ykRbZfb3ZxguBDSDh8fOR8hJwCmwBj_HKOqwmXYXpAhjxMIIjiMD7cv4UckLFzc8YYyDACFh-TgZBpIiIBQ_L4bE1nlKlpZ6hFZaymebs-eb1cIV3Yqsk7pDXmi6p9p1VLuw-LSHXVYOsq07rtDOlXVesTclTmtcPx7h6R1-vZy_Q2eHi6uZtePQQKZJoGORNJ4n8jdcxizlmueaqVBl2kPOIRFkoogRFALEBgIblCFBJCjlpGZQliRC623oU1nz26Lmsqp7Cu8xZN7zLBkjjxHUB69PwPOje99et5CgBEKH2TX6GyxjmLZbbZ3C4zYNk6c-YzZ-vMHj3bCfuiQb0Hf6J6INgCvggu_xVl97O3jfAbPd-EkQ</recordid><startdate>202411</startdate><enddate>202411</enddate><creator>Janisch, Judith</creator><creator>Kirven, Jack</creator><creator>Schapker, Nicole</creator><creator>Myers, Lydia C.</creator><creator>Shapiro, Liza J.</creator><creator>Young, Jesse W.</creator><general>Wiley Subscription Services, Inc</general><scope>24P</scope><scope>WIN</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7TK</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H94</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-3300-6292</orcidid><orcidid>https://orcid.org/0000-0001-9138-5433</orcidid></search><sort><creationdate>202411</creationdate><title>Protocol to record and analyze primate leaping in three dimensions in the wild</title><author>Janisch, Judith ; Kirven, Jack ; Schapker, Nicole ; Myers, Lydia C. ; Shapiro, Liza J. ; Young, Jesse W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1899-a03778458d606220ad29dcd1db92525ebc3c3e5116313eb82cee38142ed85ff13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Acceleration</topic><topic>Accessibility</topic><topic>Animals</topic><topic>Biomechanical engineering</topic><topic>Biomechanical Phenomena</topic><topic>Biomechanics</topic><topic>Cameras</topic><topic>Data analysis</topic><topic>Data collection</topic><topic>Kinematics</topic><topic>leaping</topic><topic>Locomotion</topic><topic>Locomotion - physiology</topic><topic>Locomotor activity</topic><topic>Matlab</topic><topic>Monkeys & apes</topic><topic>Motion capture</topic><topic>Movement</topic><topic>Performance measurement</topic><topic>primate locomotion</topic><topic>Primates</topic><topic>Primates - physiology</topic><topic>Three dimensional motion</topic><topic>Tripods</topic><topic>Workflow</topic><topic>Zoom lenses</topic><toplevel>online_resources</toplevel><creatorcontrib>Janisch, Judith</creatorcontrib><creatorcontrib>Kirven, Jack</creatorcontrib><creatorcontrib>Schapker, Nicole</creatorcontrib><creatorcontrib>Myers, Lydia C.</creatorcontrib><creatorcontrib>Shapiro, Liza J.</creatorcontrib><creatorcontrib>Young, Jesse W.</creatorcontrib><collection>Wiley Open Access Journals</collection><collection>Wiley-Blackwell Free Backfiles(OpenAccess)</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of experimental zoology. Part A, Ecological and integrative physiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Janisch, Judith</au><au>Kirven, Jack</au><au>Schapker, Nicole</au><au>Myers, Lydia C.</au><au>Shapiro, Liza J.</au><au>Young, Jesse W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Protocol to record and analyze primate leaping in three dimensions in the wild</atitle><jtitle>Journal of experimental zoology. Part A, Ecological and integrative physiology</jtitle><addtitle>J Exp Zool A Ecol Integr Physiol</addtitle><date>2024-11</date><risdate>2024</risdate><volume>341</volume><issue>9</issue><spage>965</spage><epage>976</epage><pages>965-976</pages><issn>2471-5638</issn><issn>2471-5646</issn><eissn>2471-5646</eissn><abstract>Several studies comparing primate locomotion under lab versus field conditions have shown the importance of implementing both types of studies, as each has their advantages and disadvantages. However, three‐dimensional (3D) motion capture of primates has been challenging under natural conditions. In this study, we provide a detailed protocol on how to collect 3D biomechanical data on primate leaping in their natural habitat that can be widely implemented. To record primate locomotion in the dense forest we use modified GoPro Hero Black cameras with zoom lenses that can easily be carried around and set up on tripods. We outline details on how to obtain camera calibrations at greater heights and how to process the collected data using the MATLAB camera calibration app and the motion tracking software DLTdv8a. We further developed a new MATLAB application “WildLeap3D” to generate biomechanical performance metrics from the derived x, y, z coordinates of the leaps. We provide details on how to collect data on support diameter, compliance, and orientation, and combine these with the jumps to study locomotor performance in an ecological context. We successfully reconstructed leaps of wild primates in the 3D space under natural conditions and provided data on four representative leaps. We provide exemplar data on primate velocity and acceleration during a leap and show how our protocol can be used to analyze segmental kinematics. This study will help to make motion capture of freely moving animals more accessible and help further our knowledge about animal locomotion and movement.
Research Highlights
The workflow and equipment described make motion capture of wild animals more accessible, facilitating important studies.
We provide four example leaps of wild primates in different species, variable environments and several types of jumps.</abstract><cop>United States</cop><pub>Wiley Subscription Services, Inc</pub><pmid>38973531</pmid><doi>10.1002/jez.2849</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-3300-6292</orcidid><orcidid>https://orcid.org/0000-0001-9138-5433</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Acceleration Accessibility Animals Biomechanical engineering Biomechanical Phenomena Biomechanics Cameras Data analysis Data collection Kinematics leaping Locomotion Locomotion - physiology Locomotor activity Matlab Monkeys & apes Motion capture Movement Performance measurement primate locomotion Primates Primates - physiology Three dimensional motion Tripods Workflow Zoom lenses |
title | Protocol to record and analyze primate leaping in three dimensions in the wild |
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