Quantitative Proteomics and Metabolomics of Culture Medium from Single Human Embryo Reveal Embryo Quality-Related Multiomics Biomarkers

• Published in: Analytical chemistry (Washington) 2024-07, Vol.96 (29), p.11832-11844
• Main Authors: Deng, Shuxin, Xu, Yuan, Warden, Antony R., Xu, Li, Duan, Xiaoqian, He, Jie, Bao, Kaiwen, Xiao, Runing, Azmat, Mehmoona, Hong, Liao, Jiang, Lai, Shen, Guangxia, Zhang, Zhenbo, Ding, Xianting
• Format: Article
• Language: English
• Subjects: Biological analysis; Biomarkers; Biomarkers - analysis; Biomarkers - metabolism; Biomolecules; Blastocyst - cytology; Blastocyst - metabolism; Culture; Culture media; Culture Media - chemistry; Culture Media - metabolism; Embryo Culture Techniques; Embryo, Mammalian - metabolism; Embryos; Humans; Implantation; Metabolites; Metabolomics; Metabolomics - methods; Multiomics; Proteins; Proteomics; Proteomics - methods; Quality assessment; Quality control
• ISSN: 0003-2700; 1520-6882; 1520-6882
• DOI: 10.1021/acs.analchem.4c01494

An effective tool to assess embryo quality in the assisted reproduction clinical practice will enhance successful implantation rates and mitigate high risks of multiple pregnancies. Potential biomarkers secreted into culture medium (CM) during embryo development enable rapid and noninvasive methods of assessing embryo quality. However, small volumes, low biomolecule concentrations, and impurity interference collectively preclude the identification of quality-related biomarkers in single blastocyst CM. Here, we developed a noninvasive trace multiomics approach to screen for potential markers in individual human blastocyst CM. We collected 84 CM samples and divided them into high-quality (HQ) and low-quality (LQ) groups. We evaluated the differentially expressed proteins (DEPs) and metabolites (DEMs) in HQ and LQ CM. A total of 504 proteins and 189 metabolites were detected in individual blastocyst CM. Moreover, 9 DEPs and 32 DEMs were identified in different quality embryo CM. We also categorized HQ embryos into positive implantation (PI) and negative implantation (NI) groups based on ultrasound findings on day 28. We identified 41 DEPs and 4 DEMs associated with clinical implantation outcomes in morphologically HQ embryos using a multiomics analysis approach. This study provides a noninvasive multiomics analysis technique and identifies potential biomarkers for clinical embryo developmental quality assessment.