Exome sequencing revealed variants in SGCA and SIL1 genes underlying limb girdle muscular dystrophy and Marinesco–Sjögren syndrome patients

• Published in: Molecular biology reports 2024-12, Vol.51 (1), p.853, Article 853
• Main Authors: Faheem, Ali, Masud, Rizwan, Nasir, Rabea, Awan, Zeeshan Khalid, Nasir, Hammad Ali, Khan, Zara Khalid, Fayyaz, Hajra, Raza, Syed Irfan
• Format: Article
• Language: English
• Subjects: Animal Anatomy; Animal Biochemistry; Atrophy; Biomedical and Life Sciences; Children; Creatine; Creatine kinase; Echocardiography; Electromyography; Epidemiology; Genes; Genetic analysis; Genetic counseling; Genetic diversity; Geographical distribution; Histology; Kinases; Life Sciences; Magnetic resonance imaging; Morphology; Muscular dystrophy; Mutation; Nerve conduction; Nervous system; Neurodegenerative diseases; Neuroimaging; Original Article; Population genetics; Population studies; Sil1 protein; Sjogren's syndrome; Skeletal muscle; Strabismus; Whole genome sequencing
• ISSN: 0301-4851; 1573-4978; 1573-4978
• DOI: 10.1007/s11033-024-09746-5

Background Inherited neuromuscular (NMD) and neurodegenerative diseases (NDD) belong to two distinct categories that disturb different components of the nervous system, leading to a variety of different symptoms and clinical manifestations. Both NMD and NDD are a heterogeneous group of genetic conditions. Genetic variations in the SGCA and SIL1 genes have been implicated in causing Limb Girdle Muscular Dystrophy (LGMD), a type of neuromuscular disorder, and Marinesco–Sjögren Syndrome (MSS) which is a neurodegenerative disorder. Methods In the present study, we have investigated four patients presenting LGMD and five patients with MSS features. After collecting detailed clinical and family history, necessary laboratory investigations, including estimation of a skeletal muscle marker enzyme serum creatine kinase (CK), nerve conduction study (NCS), electromyography (EMG), echocardiography (Echo), Magnetic resonance imaging (MRI –brain), CT-brain and X-rays were performed. Whole exome followed by Sanger sequencing was employed to search for the disease-causing variants. Results Physical examination in LGMD patients revealed poor muscle tone and facing difficulty in straightening up from the floor. Clinical history revealed frequent falls and strenuousness in climbing stairs. They started toe-walking in early childhood. Laboratory investigations confirmed elevated CK levels and abnormal NCS and EMG. The MSS patients showed abnormalities in gate and jerking movement, abnormal speech, and strabismus with cataract. MRI-brain showed cerebral atrophy in some MSS patients with elevated CK levels. Whole exome sequencing revealed a nonsense variant [c.C574T, p.(Arg192*)] in the SGCA gene and a frameshift [c.936dupG, p.(Leu313AlaFs*39)] in the SIL1 gene in LGMD and MSS patients, respectively. Conclusion Our study emphasizes the significance of integrating clinical and genetic analyses for precise diagnosis and tailored management strategies in inherited NMD and NDD disorders. To the best of our knowledge, this is the first study documenting SGCA and SIL1 recurrent variants in subcontinent populations with few rare clinical features. The recurrent mutations expanding the global understanding of the mutation’s geographic and ethnic distribution and contributing valuable epidemiological data. The study will facilitate genetic counseling for families experiencing similar clinical features, both within Pakistani populations and in other regions.