PDCdb: the biological activity and pharmaceutical information of peptide-drug conjugate (PDC)

• Published in: Nucleic acids research 2024-10
• Main Authors: Sun, Xiuna, Li, Hanyang, Chen, Zhen, Zhang, Yang, Wei, Zhangle, Xu, Hangwei, Liao, Yang, Jiang, Wanghao, Ge, Yichao, Zheng, Lingyan, Li, Teng, Wu, Yuting, Luo, Meiyin, Fang, Luo, Dong, Xiaowu, Xiao, Mang, Han, Lianyi, Jia, Qingzhong, Zhu, Feng
• Format: Article
• Language: English
• ISSN: 0305-1048; 1362-4962; 1362-4962
• DOI: 10.1093/nar/gkae859

Peptide-drug conjugates (PDCs) have emerged as a promising class of targeted therapeutics with substantial pharmaceutical advantages and market potentials, which is a combination of a peptide (selective to the disease-relevant target), a linker (stable in circulation but cleavable at target site) and a cytotoxic/radioactive drug (efficacious/traceable for disease). Among existing PDCs, those based on radiopharmaceuticals (a.k.a. radioactive drugs) are valued due to their accurate imaging and targeted destruction of disease sites. It's demanded to accumulate the biological activity and pharmaceutical information of PDCs. Herein, a database PDCdb was thus constructed to systematically describe these valuable data. Particularly, biological activities for 2036 PDCs were retrieved from literatures, which resulted in 1684, 613 and 2753 activity data generated based on clinical trial, animal model and cell line, respectively. Furthermore, the pharmaceutical information for all 2036 PDCs was collected, which gave the diverse data of (a) ADME property, plasma half-life and administration approach of a PDC and (b) chemical modification, primary target, mode of action, conjugating feature of the constituent peptide/linker/drug. In sum, PDCdb systematically provided the biological activities and pharmaceutical information for the most comprehensive list of PDCs among the available databases, which was expected to attract broad interest from related communities and could be freely accessible at: https://idrblab.org/PDCdb/.