The puzzle of two tandem acyl-CoA ligases of Pseudomonas putida F1

• Published in: Applied and environmental microbiology 2024-11, Vol.90 (11), p.e0126724
• Main Authors: Dong, Huijuan, Chen, Bo, Wang, Haihong, Cronan, John E
• Format: Article
• Language: English
• Subjects: Bacterial Proteins - genetics; Bacterial Proteins - metabolism; Bacteriology; Biodegradation; Coenzyme A Ligases - genetics; Coenzyme A Ligases - metabolism; Escherichia coli - genetics; Escherichia coli - metabolism; Fatty Acids - metabolism; Gene Deletion; Pseudomonas putida - enzymology; Pseudomonas putida - genetics; Pseudomonas putida - metabolism
• ISSN: 0099-2240; 1098-5336; 1098-5336
• DOI: 10.1128/aem.01267-24

The F1 genome and those of many other pseudomonads contain two tandem genes encoding acyl-CoA ligases Pput_1340 ( ) and Pput_1339 ( ) with Pput_1339 ( ) being the upstream gene. The designation was assigned when both genes were found to complement the growth of an acyl-CoA synthetase deletion strain with oleic acid as sole carbon source. Site-directed mutagenesis showed that residues of the ATP/AMP domain required for function of FadD were also essential for full function of FadD1 and FadD2. Growth of the constructed ∆ , ∆ and ∆ ∆ strains was tested in minimal medium with different chain length fatty acids as sole carbon sources. Lack of FadD1 significantly retarded growth with different chain length fatty acids and lack of both FadD1 and FadD2 further retarded growth. Derivatives of the ∆ ∆ unsaturated fatty acid auxotrophic strain carrying a deletion of either ∆ or ∆ were constructed. Growth of the ∆ ∆ ∆ strain was very weak, whereas the ∆ ∆ ∆ strain grew as well as the ∆ ∆ parent strain. Overexpression of either or restored growth of the ∆ ∆ ∆ strain with overexpression having a greater effect than overexpression. The ∆ or ∆ genes are cotranscribed although the expression level of is much higher than that of . This is attributed to a promoter located within the upstream FadD2 coding sequence. bacteria demonstrate a great deal of metabolic diversity and consequently colonize a wide range of ecological niches. A characteristic of these bacteria is a pair of genes in tandem annotated as acyl-CoA ligases involved in fatty acid degradation. The F1 genome is annotated as having at least nine genes encoding acyl-CoA ligases which are scattered around the chromosome excepting the tandem pair. Since similar tandem pairs are found in other pseudomonads, we have constructed and characterized deletion mutants of the tandem ligases. We report that the encoded proteins are authentic acyl-CoA ligases involved in fatty acid degradation.