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The Description of Pseudoalteromonas apostichopi sp. nov., Vibrio apostichopi sp. nov., and Marinobacter apostichopi sp. nov. from the Fertilized Eggs and Larvae of Apostichopus japonicus
Three novel bacterial strains, FE4 T , FE10 T , and LA51 T , which are phylogenetically affiliated to the genera Pseudoalteromonas , Vibrio , or Marinobacter , respectively, isolated from fertilized eggs and juveniles of sea cucumber Apostichopus japonicus were characterized by a genome-based taxono...
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Published in: | Current microbiology 2024-08, Vol.81 (8), p.246-246, Article 246 |
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description | Three novel bacterial strains, FE4
T
, FE10
T
, and LA51
T
, which are phylogenetically affiliated to the genera
Pseudoalteromonas
,
Vibrio
, or
Marinobacter
, respectively, isolated from fertilized eggs and juveniles of sea cucumber
Apostichopus japonicus
were characterized by a genome-based taxonomical approach including multilocus sequence analysis (MLSA) combined with classical phenotypic and chemotaxonomic characterizations. A molecular network reconstructed on the basis of nucleotide sequences of four phylogenetic maker protein genes revealed that the strains FE4
T
, FE10
T
, and LA51
T
were closely related to
Pseudoalteromonas shioyasakiensis
,
Vibrio lentus
, and
Marinobacter similis
, respectively. Average nucleotide identity (ANI) comparisons against phylogenetically related species to FE4
T
, FE10
T
, and LA51
T
demonstrated that each newly described strain could not be identified as any previously described species within each genus showing |
doi_str_mv | 10.1007/s00284-024-03751-4 |
format | article |
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T
, FE10
T
, and LA51
T
, which are phylogenetically affiliated to the genera
Pseudoalteromonas
,
Vibrio
, or
Marinobacter
, respectively, isolated from fertilized eggs and juveniles of sea cucumber
Apostichopus japonicus
were characterized by a genome-based taxonomical approach including multilocus sequence analysis (MLSA) combined with classical phenotypic and chemotaxonomic characterizations. A molecular network reconstructed on the basis of nucleotide sequences of four phylogenetic maker protein genes revealed that the strains FE4
T
, FE10
T
, and LA51
T
were closely related to
Pseudoalteromonas shioyasakiensis
,
Vibrio lentus
, and
Marinobacter similis
, respectively. Average nucleotide identity (ANI) comparisons against phylogenetically related species to FE4
T
, FE10
T
, and LA51
T
demonstrated that each newly described strain could not be identified as any previously described species within each genus showing < 95% ANI: 91.3% of FE4
T
against
P. shioyasakiensis
JCM 18891
T
, 92.6% of FE10
T
against “
V. bathopelagicus
” Sal10, and 92.6% of LA51
T
against
M. similis
A3d10
T
, in maximum, respectively. Here, we show molecular phylogenetic, genomic, phenotypic, and chemotaxonomic features of the newly described species FE4
T
, FE10
T
, and LA51
T
. We also propose
Pseudoalteromonas apostichopi
sp. nov. with FE4
T
(JCM 36173
T
= LMG 33143
T
) as the type strain,
Vibrio apostichopi
sp. nov. with FE10
T
(JCM 36174
T
= LMG 33144
T
) as the type strain, and
Marinobacter apostichopi
sp. nov. with LA51
T
(JCM 36175
T
= LMG 33145
T
) as the type strain.</description><identifier>ISSN: 0343-8651</identifier><identifier>ISSN: 1432-0991</identifier><identifier>EISSN: 1432-0991</identifier><identifier>DOI: 10.1007/s00284-024-03751-4</identifier><identifier>PMID: 38940874</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Amino acid sequence ; Animals ; Apostichopus japonicus ; Bacteria ; Bacterial Typing Techniques ; Biomedical and Life Sciences ; Biotechnology ; chemotaxonomy ; DNA, Bacterial - genetics ; Eggs ; Fatty Acids - analysis ; Fatty Acids - chemistry ; Genera ; Genome, Bacterial ; Genomic analysis ; genomics ; genus ; Larva - microbiology ; Larvae ; Life Sciences ; Marinobacter ; Marinobacter - classification ; Marinobacter - genetics ; Marinobacter - isolation & purification ; Microbiology ; Multilocus Sequence Typing ; New species ; Novel Prokaryotic Taxa ; Nucleotide sequence ; Nucleotides ; phenotype ; Phylogenetics ; Phylogeny ; Pseudoalteromonas ; Pseudoalteromonas - classification ; Pseudoalteromonas - genetics ; Pseudoalteromonas - isolation & purification ; RNA, Ribosomal, 16S - genetics ; Sequence analysis ; species ; Stichopus - microbiology ; Strains (organisms) ; Vibrio ; Vibrio - classification ; Vibrio - genetics ; Vibrio - isolation & purification ; Vibrio lentus ; Zygote - microbiology</subject><ispartof>Current microbiology, 2024-08, Vol.81 (8), p.246-246, Article 246</ispartof><rights>The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c359t-f0ac42763158d43646cf0c865b690702b8915e7c0e243b1858f4367d96cb95b33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38940874$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kudo, Rika</creatorcontrib><creatorcontrib>Yamano, Ryota</creatorcontrib><creatorcontrib>Yu, Juanwen</creatorcontrib><creatorcontrib>Hatakeyama, Shuya</creatorcontrib><creatorcontrib>Jiang, Chunqi</creatorcontrib><creatorcontrib>Mino, Sayaka</creatorcontrib><creatorcontrib>Yamaki, Shogo</creatorcontrib><creatorcontrib>Ando, Yasuhiro</creatorcontrib><creatorcontrib>Sakai, Yuichi</creatorcontrib><creatorcontrib>Sawabe, Tomoo</creatorcontrib><title>The Description of Pseudoalteromonas apostichopi sp. nov., Vibrio apostichopi sp. nov., and Marinobacter apostichopi sp. nov. from the Fertilized Eggs and Larvae of Apostichopus japonicus</title><title>Current microbiology</title><addtitle>Curr Microbiol</addtitle><addtitle>Curr Microbiol</addtitle><description>Three novel bacterial strains, FE4
T
, FE10
T
, and LA51
T
, which are phylogenetically affiliated to the genera
Pseudoalteromonas
,
Vibrio
, or
Marinobacter
, respectively, isolated from fertilized eggs and juveniles of sea cucumber
Apostichopus japonicus
were characterized by a genome-based taxonomical approach including multilocus sequence analysis (MLSA) combined with classical phenotypic and chemotaxonomic characterizations. A molecular network reconstructed on the basis of nucleotide sequences of four phylogenetic maker protein genes revealed that the strains FE4
T
, FE10
T
, and LA51
T
were closely related to
Pseudoalteromonas shioyasakiensis
,
Vibrio lentus
, and
Marinobacter similis
, respectively. Average nucleotide identity (ANI) comparisons against phylogenetically related species to FE4
T
, FE10
T
, and LA51
T
demonstrated that each newly described strain could not be identified as any previously described species within each genus showing < 95% ANI: 91.3% of FE4
T
against
P. shioyasakiensis
JCM 18891
T
, 92.6% of FE10
T
against “
V. bathopelagicus
” Sal10, and 92.6% of LA51
T
against
M. similis
A3d10
T
, in maximum, respectively. Here, we show molecular phylogenetic, genomic, phenotypic, and chemotaxonomic features of the newly described species FE4
T
, FE10
T
, and LA51
T
. We also propose
Pseudoalteromonas apostichopi
sp. nov. with FE4
T
(JCM 36173
T
= LMG 33143
T
) as the type strain,
Vibrio apostichopi
sp. nov. with FE10
T
(JCM 36174
T
= LMG 33144
T
) as the type strain, and
Marinobacter apostichopi
sp. nov. with LA51
T
(JCM 36175
T
= LMG 33145
T
) as the type strain.</description><subject>Amino acid sequence</subject><subject>Animals</subject><subject>Apostichopus japonicus</subject><subject>Bacteria</subject><subject>Bacterial Typing Techniques</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>chemotaxonomy</subject><subject>DNA, Bacterial - genetics</subject><subject>Eggs</subject><subject>Fatty Acids - analysis</subject><subject>Fatty Acids - chemistry</subject><subject>Genera</subject><subject>Genome, Bacterial</subject><subject>Genomic analysis</subject><subject>genomics</subject><subject>genus</subject><subject>Larva - microbiology</subject><subject>Larvae</subject><subject>Life Sciences</subject><subject>Marinobacter</subject><subject>Marinobacter - classification</subject><subject>Marinobacter - genetics</subject><subject>Marinobacter - isolation & purification</subject><subject>Microbiology</subject><subject>Multilocus Sequence Typing</subject><subject>New species</subject><subject>Novel Prokaryotic Taxa</subject><subject>Nucleotide sequence</subject><subject>Nucleotides</subject><subject>phenotype</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Pseudoalteromonas</subject><subject>Pseudoalteromonas - classification</subject><subject>Pseudoalteromonas - genetics</subject><subject>Pseudoalteromonas - isolation & purification</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence analysis</subject><subject>species</subject><subject>Stichopus - microbiology</subject><subject>Strains (organisms)</subject><subject>Vibrio</subject><subject>Vibrio - classification</subject><subject>Vibrio - genetics</subject><subject>Vibrio - isolation & purification</subject><subject>Vibrio lentus</subject><subject>Zygote - microbiology</subject><issn>0343-8651</issn><issn>1432-0991</issn><issn>1432-0991</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqFks1u1DAUhS0EokPhBVggS2xYkOH6L7aXVWkBaaqyKGwtx3GmHmXiYCeV2lfj5fDMlCIhfhaWF_c7595rH4ReElgSAPkuA1DFK6DlMClIxR-hBeGMVqA1eYwWwDirVC3IEXqW8waAUA3kKTpiSnNQki_Q96trj9_77FIYpxAHHDv8Ofu5jbaffIrbONiM7RjzFNx1HAPO4xIP8Wb5Fn8NTQrxL0U7tPjCpjDExrri9EcMd6UDnsoI5z5NoQ93vsVn63Xey1c23Vi_m-jkQTtnvClOQ3Bzfo6edLbP_sX9fYy-nJ9dnX6sVpcfPp2erCrHhJ6qDqzjVNaMCNVyVvPadeDKszS1Bgm0UZoILx14yllDlFBdoWSra9do0TB2jN4cfMcUv80-T2YbsvN9bwcf52yKceG1UvT_KEhGmVBKFvT1b-gmzmkoi-wppkGQXW96oFyKOSffmTGFrU23hoDZpcAcUmBKCsw-BYYX0at767nZ-vZB8vPbC8AOQC6lYe3Tr97_sP0BxEy-Aw</recordid><startdate>20240801</startdate><enddate>20240801</enddate><creator>Kudo, Rika</creator><creator>Yamano, Ryota</creator><creator>Yu, Juanwen</creator><creator>Hatakeyama, Shuya</creator><creator>Jiang, Chunqi</creator><creator>Mino, Sayaka</creator><creator>Yamaki, Shogo</creator><creator>Ando, Yasuhiro</creator><creator>Sakai, Yuichi</creator><creator>Sawabe, Tomoo</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20240801</creationdate><title>The Description of Pseudoalteromonas apostichopi sp. nov., Vibrio apostichopi sp. nov., and Marinobacter apostichopi sp. nov. from the Fertilized Eggs and Larvae of Apostichopus japonicus</title><author>Kudo, Rika ; Yamano, Ryota ; Yu, Juanwen ; Hatakeyama, Shuya ; Jiang, Chunqi ; Mino, Sayaka ; Yamaki, Shogo ; Ando, Yasuhiro ; Sakai, Yuichi ; Sawabe, Tomoo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-f0ac42763158d43646cf0c865b690702b8915e7c0e243b1858f4367d96cb95b33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Amino acid sequence</topic><topic>Animals</topic><topic>Apostichopus japonicus</topic><topic>Bacteria</topic><topic>Bacterial Typing Techniques</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>chemotaxonomy</topic><topic>DNA, Bacterial - genetics</topic><topic>Eggs</topic><topic>Fatty Acids - analysis</topic><topic>Fatty Acids - chemistry</topic><topic>Genera</topic><topic>Genome, Bacterial</topic><topic>Genomic analysis</topic><topic>genomics</topic><topic>genus</topic><topic>Larva - microbiology</topic><topic>Larvae</topic><topic>Life Sciences</topic><topic>Marinobacter</topic><topic>Marinobacter - classification</topic><topic>Marinobacter - genetics</topic><topic>Marinobacter - isolation & purification</topic><topic>Microbiology</topic><topic>Multilocus Sequence Typing</topic><topic>New species</topic><topic>Novel Prokaryotic Taxa</topic><topic>Nucleotide sequence</topic><topic>Nucleotides</topic><topic>phenotype</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Pseudoalteromonas</topic><topic>Pseudoalteromonas - classification</topic><topic>Pseudoalteromonas - genetics</topic><topic>Pseudoalteromonas - isolation & purification</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence analysis</topic><topic>species</topic><topic>Stichopus - microbiology</topic><topic>Strains (organisms)</topic><topic>Vibrio</topic><topic>Vibrio - classification</topic><topic>Vibrio - genetics</topic><topic>Vibrio - isolation & purification</topic><topic>Vibrio lentus</topic><topic>Zygote - microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kudo, Rika</creatorcontrib><creatorcontrib>Yamano, Ryota</creatorcontrib><creatorcontrib>Yu, Juanwen</creatorcontrib><creatorcontrib>Hatakeyama, Shuya</creatorcontrib><creatorcontrib>Jiang, Chunqi</creatorcontrib><creatorcontrib>Mino, Sayaka</creatorcontrib><creatorcontrib>Yamaki, Shogo</creatorcontrib><creatorcontrib>Ando, Yasuhiro</creatorcontrib><creatorcontrib>Sakai, Yuichi</creatorcontrib><creatorcontrib>Sawabe, Tomoo</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Current microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kudo, Rika</au><au>Yamano, Ryota</au><au>Yu, Juanwen</au><au>Hatakeyama, Shuya</au><au>Jiang, Chunqi</au><au>Mino, Sayaka</au><au>Yamaki, Shogo</au><au>Ando, Yasuhiro</au><au>Sakai, Yuichi</au><au>Sawabe, Tomoo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Description of Pseudoalteromonas apostichopi sp. nov., Vibrio apostichopi sp. nov., and Marinobacter apostichopi sp. nov. from the Fertilized Eggs and Larvae of Apostichopus japonicus</atitle><jtitle>Current microbiology</jtitle><stitle>Curr Microbiol</stitle><addtitle>Curr Microbiol</addtitle><date>2024-08-01</date><risdate>2024</risdate><volume>81</volume><issue>8</issue><spage>246</spage><epage>246</epage><pages>246-246</pages><artnum>246</artnum><issn>0343-8651</issn><issn>1432-0991</issn><eissn>1432-0991</eissn><abstract>Three novel bacterial strains, FE4
T
, FE10
T
, and LA51
T
, which are phylogenetically affiliated to the genera
Pseudoalteromonas
,
Vibrio
, or
Marinobacter
, respectively, isolated from fertilized eggs and juveniles of sea cucumber
Apostichopus japonicus
were characterized by a genome-based taxonomical approach including multilocus sequence analysis (MLSA) combined with classical phenotypic and chemotaxonomic characterizations. A molecular network reconstructed on the basis of nucleotide sequences of four phylogenetic maker protein genes revealed that the strains FE4
T
, FE10
T
, and LA51
T
were closely related to
Pseudoalteromonas shioyasakiensis
,
Vibrio lentus
, and
Marinobacter similis
, respectively. Average nucleotide identity (ANI) comparisons against phylogenetically related species to FE4
T
, FE10
T
, and LA51
T
demonstrated that each newly described strain could not be identified as any previously described species within each genus showing < 95% ANI: 91.3% of FE4
T
against
P. shioyasakiensis
JCM 18891
T
, 92.6% of FE10
T
against “
V. bathopelagicus
” Sal10, and 92.6% of LA51
T
against
M. similis
A3d10
T
, in maximum, respectively. Here, we show molecular phylogenetic, genomic, phenotypic, and chemotaxonomic features of the newly described species FE4
T
, FE10
T
, and LA51
T
. We also propose
Pseudoalteromonas apostichopi
sp. nov. with FE4
T
(JCM 36173
T
= LMG 33143
T
) as the type strain,
Vibrio apostichopi
sp. nov. with FE10
T
(JCM 36174
T
= LMG 33144
T
) as the type strain, and
Marinobacter apostichopi
sp. nov. with LA51
T
(JCM 36175
T
= LMG 33145
T
) as the type strain.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>38940874</pmid><doi>10.1007/s00284-024-03751-4</doi><tpages>1</tpages></addata></record> |
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language | eng |
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source | Springer Link |
subjects | Amino acid sequence Animals Apostichopus japonicus Bacteria Bacterial Typing Techniques Biomedical and Life Sciences Biotechnology chemotaxonomy DNA, Bacterial - genetics Eggs Fatty Acids - analysis Fatty Acids - chemistry Genera Genome, Bacterial Genomic analysis genomics genus Larva - microbiology Larvae Life Sciences Marinobacter Marinobacter - classification Marinobacter - genetics Marinobacter - isolation & purification Microbiology Multilocus Sequence Typing New species Novel Prokaryotic Taxa Nucleotide sequence Nucleotides phenotype Phylogenetics Phylogeny Pseudoalteromonas Pseudoalteromonas - classification Pseudoalteromonas - genetics Pseudoalteromonas - isolation & purification RNA, Ribosomal, 16S - genetics Sequence analysis species Stichopus - microbiology Strains (organisms) Vibrio Vibrio - classification Vibrio - genetics Vibrio - isolation & purification Vibrio lentus Zygote - microbiology |
title | The Description of Pseudoalteromonas apostichopi sp. nov., Vibrio apostichopi sp. nov., and Marinobacter apostichopi sp. nov. from the Fertilized Eggs and Larvae of Apostichopus japonicus |
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