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Amino acid metabolism and MAP kinase signaling pathway play opposite roles in the regulation of ethanol production during fermentation of sugarcane molasses in budding yeast
Sugarcane molasses is one of the main raw materials for bioethanol production, and Saccharomyces cerevisiae is the major biofuel-producing organism. In this study, a batch fermentation model has been used to examine ethanol titers of deletion mutants for all yeast nonessential genes in this yeast ge...
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Published in: | Genomics (San Diego, Calif.) Calif.), 2024-03, Vol.116 (2), p.110811, Article 110811 |
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creator | Jiang, Linghuo Shen, Yuzhi Jiang, Yongqiang Mei, Weiping Wei, Liudan Feng, Jinrong Wei, Chunyu Liao, Xiufan Mo, Yiping Pan, Lingxin Wei, Min Gu, Yiying Zheng, Jiashi |
description | Sugarcane molasses is one of the main raw materials for bioethanol production, and Saccharomyces cerevisiae is the major biofuel-producing organism. In this study, a batch fermentation model has been used to examine ethanol titers of deletion mutants for all yeast nonessential genes in this yeast genome. A total of 42 genes are identified to be involved in ethanol production during fermentation of sugarcane molasses. Deletion mutants of seventeen genes show increased ethanol titers, while deletion mutants for twenty-five genes exhibit reduced ethanol titers. Two MAP kinases Hog1 and Kss1 controlling the high osmolarity and glycerol (HOG) signaling and the filamentous growth, respectively, are negatively involved in the regulation of ethanol production. In addition, twelve genes involved in amino acid metabolism are crucial for ethanol production during fermentation. Our findings provide novel targets and strategies for genetically engineering industrial yeast strains to improve ethanol titer during fermentation of sugarcane molasses.
•Screening 4797 gene mutants for ethanol fermentation titers of sugarcane molasses.•Forty-two genes involved in ethanol production in sugarcane molasses fermentation.•Seventeen mutants show increased, but 25 mutants exhibit reduced, ethanol yields.•Two MAP kinases Hog1 and Kss1 negatively regulate ethanol production.•Amino acid metabolism are crucial for ethanol production during fermentation. |
doi_str_mv | 10.1016/j.ygeno.2024.110811 |
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•Screening 4797 gene mutants for ethanol fermentation titers of sugarcane molasses.•Forty-two genes involved in ethanol production in sugarcane molasses fermentation.•Seventeen mutants show increased, but 25 mutants exhibit reduced, ethanol yields.•Two MAP kinases Hog1 and Kss1 negatively regulate ethanol production.•Amino acid metabolism are crucial for ethanol production during fermentation.</description><identifier>ISSN: 0888-7543</identifier><identifier>ISSN: 1089-8646</identifier><identifier>EISSN: 1089-8646</identifier><identifier>DOI: 10.1016/j.ygeno.2024.110811</identifier><identifier>PMID: 38387766</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Amino acid metabolism ; Amino acid permease ; Amino Acids ; batch fermentation ; Ethanol ; Ethanol - metabolism ; ethanol production ; Fermentation ; genome ; genomics ; glycerol ; Hog1 ; Kss1 ; MAP kinase ; MAP Kinase Signaling System ; mitogen-activated protein kinase ; Molasses ; osmolarity ; Saccharomyces cerevisiae ; Saccharomyces cerevisiae - genetics ; Saccharomyces cerevisiae - metabolism ; Saccharomycetales - metabolism ; Saccharum - genetics ; Saccharum - metabolism ; sugarcane ; Sugarcane molasses ; yeasts</subject><ispartof>Genomics (San Diego, Calif.), 2024-03, Vol.116 (2), p.110811, Article 110811</ispartof><rights>2023</rights><rights>Copyright © 2023. Published by Elsevier Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c387t-317c7be1373b924391148ff2a27b40805c706d17cd11487177302998bd07ae433</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38387766$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jiang, Linghuo</creatorcontrib><creatorcontrib>Shen, Yuzhi</creatorcontrib><creatorcontrib>Jiang, Yongqiang</creatorcontrib><creatorcontrib>Mei, Weiping</creatorcontrib><creatorcontrib>Wei, Liudan</creatorcontrib><creatorcontrib>Feng, Jinrong</creatorcontrib><creatorcontrib>Wei, Chunyu</creatorcontrib><creatorcontrib>Liao, Xiufan</creatorcontrib><creatorcontrib>Mo, Yiping</creatorcontrib><creatorcontrib>Pan, Lingxin</creatorcontrib><creatorcontrib>Wei, Min</creatorcontrib><creatorcontrib>Gu, Yiying</creatorcontrib><creatorcontrib>Zheng, Jiashi</creatorcontrib><title>Amino acid metabolism and MAP kinase signaling pathway play opposite roles in the regulation of ethanol production during fermentation of sugarcane molasses in budding yeast</title><title>Genomics (San Diego, Calif.)</title><addtitle>Genomics</addtitle><description>Sugarcane molasses is one of the main raw materials for bioethanol production, and Saccharomyces cerevisiae is the major biofuel-producing organism. In this study, a batch fermentation model has been used to examine ethanol titers of deletion mutants for all yeast nonessential genes in this yeast genome. A total of 42 genes are identified to be involved in ethanol production during fermentation of sugarcane molasses. Deletion mutants of seventeen genes show increased ethanol titers, while deletion mutants for twenty-five genes exhibit reduced ethanol titers. Two MAP kinases Hog1 and Kss1 controlling the high osmolarity and glycerol (HOG) signaling and the filamentous growth, respectively, are negatively involved in the regulation of ethanol production. In addition, twelve genes involved in amino acid metabolism are crucial for ethanol production during fermentation. Our findings provide novel targets and strategies for genetically engineering industrial yeast strains to improve ethanol titer during fermentation of sugarcane molasses.
•Screening 4797 gene mutants for ethanol fermentation titers of sugarcane molasses.•Forty-two genes involved in ethanol production in sugarcane molasses fermentation.•Seventeen mutants show increased, but 25 mutants exhibit reduced, ethanol yields.•Two MAP kinases Hog1 and Kss1 negatively regulate ethanol production.•Amino acid metabolism are crucial for ethanol production during fermentation.</description><subject>Amino acid metabolism</subject><subject>Amino acid permease</subject><subject>Amino Acids</subject><subject>batch fermentation</subject><subject>Ethanol</subject><subject>Ethanol - metabolism</subject><subject>ethanol production</subject><subject>Fermentation</subject><subject>genome</subject><subject>genomics</subject><subject>glycerol</subject><subject>Hog1</subject><subject>Kss1</subject><subject>MAP kinase</subject><subject>MAP Kinase Signaling System</subject><subject>mitogen-activated protein kinase</subject><subject>Molasses</subject><subject>osmolarity</subject><subject>Saccharomyces cerevisiae</subject><subject>Saccharomyces cerevisiae - genetics</subject><subject>Saccharomyces cerevisiae - metabolism</subject><subject>Saccharomycetales - metabolism</subject><subject>Saccharum - genetics</subject><subject>Saccharum - metabolism</subject><subject>sugarcane</subject><subject>Sugarcane molasses</subject><subject>yeasts</subject><issn>0888-7543</issn><issn>1089-8646</issn><issn>1089-8646</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqFkcGOFCEQhonRuLOrT2BiOHrpEZqehj54mGzUNVmjBz0TGqpnGGlogV4zD-U7Sm-ve9QLFaiv_irqR-gVJVtKaPv2tD0fwIdtTepmSykRlD5BmxK7SrRN-xRtiBCi4ruGXaDLlE6EkI6J-jm6YIIJztt2g37vR-sDVtoaPEJWfXA2jVh5gz_vv-If1qsEONmDV876A55UPv5SZzy5coRpCslmwDE4SNh6nI_lAofZqWyDx2HAkI_KB4enGMys71_NHBepAeIIPj-SaT6oqJUHPAanUloV-9mYhT6DSvkFejYol-DlQ7xC3z-8_3Z9U91--fjpen9b6fKvXDHKNe-BMs76rm5YR2kjhqFWNe8bIshOc9KaApklwSnnjNRdJ3pDuIKGsSv0ZtUtU_-cIWU52qTBuTJdmJNkdMd4W3Pe_RetO84oaRhZULaiOoaUIgxyinZU8SwpkYul8iTvLZWLpXK1tFS9fmgw9yOYx5q_Hhbg3QpA2cidhSiTtuA1GBtBZ2mC_WeDPxKotZo</recordid><startdate>202403</startdate><enddate>202403</enddate><creator>Jiang, Linghuo</creator><creator>Shen, Yuzhi</creator><creator>Jiang, Yongqiang</creator><creator>Mei, Weiping</creator><creator>Wei, Liudan</creator><creator>Feng, Jinrong</creator><creator>Wei, Chunyu</creator><creator>Liao, Xiufan</creator><creator>Mo, Yiping</creator><creator>Pan, Lingxin</creator><creator>Wei, Min</creator><creator>Gu, Yiying</creator><creator>Zheng, Jiashi</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>202403</creationdate><title>Amino acid metabolism and MAP kinase signaling pathway play opposite roles in the regulation of ethanol production during fermentation of sugarcane molasses in budding yeast</title><author>Jiang, Linghuo ; Shen, Yuzhi ; Jiang, Yongqiang ; Mei, Weiping ; Wei, Liudan ; Feng, Jinrong ; Wei, Chunyu ; Liao, Xiufan ; Mo, Yiping ; Pan, Lingxin ; Wei, Min ; Gu, Yiying ; Zheng, Jiashi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c387t-317c7be1373b924391148ff2a27b40805c706d17cd11487177302998bd07ae433</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Amino acid metabolism</topic><topic>Amino acid permease</topic><topic>Amino Acids</topic><topic>batch fermentation</topic><topic>Ethanol</topic><topic>Ethanol - metabolism</topic><topic>ethanol production</topic><topic>Fermentation</topic><topic>genome</topic><topic>genomics</topic><topic>glycerol</topic><topic>Hog1</topic><topic>Kss1</topic><topic>MAP kinase</topic><topic>MAP Kinase Signaling System</topic><topic>mitogen-activated protein kinase</topic><topic>Molasses</topic><topic>osmolarity</topic><topic>Saccharomyces cerevisiae</topic><topic>Saccharomyces cerevisiae - genetics</topic><topic>Saccharomyces cerevisiae - metabolism</topic><topic>Saccharomycetales - metabolism</topic><topic>Saccharum - genetics</topic><topic>Saccharum - metabolism</topic><topic>sugarcane</topic><topic>Sugarcane molasses</topic><topic>yeasts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jiang, Linghuo</creatorcontrib><creatorcontrib>Shen, Yuzhi</creatorcontrib><creatorcontrib>Jiang, Yongqiang</creatorcontrib><creatorcontrib>Mei, Weiping</creatorcontrib><creatorcontrib>Wei, Liudan</creatorcontrib><creatorcontrib>Feng, Jinrong</creatorcontrib><creatorcontrib>Wei, Chunyu</creatorcontrib><creatorcontrib>Liao, Xiufan</creatorcontrib><creatorcontrib>Mo, Yiping</creatorcontrib><creatorcontrib>Pan, Lingxin</creatorcontrib><creatorcontrib>Wei, Min</creatorcontrib><creatorcontrib>Gu, Yiying</creatorcontrib><creatorcontrib>Zheng, Jiashi</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Genomics (San Diego, Calif.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jiang, Linghuo</au><au>Shen, Yuzhi</au><au>Jiang, Yongqiang</au><au>Mei, Weiping</au><au>Wei, Liudan</au><au>Feng, Jinrong</au><au>Wei, Chunyu</au><au>Liao, Xiufan</au><au>Mo, Yiping</au><au>Pan, Lingxin</au><au>Wei, Min</au><au>Gu, Yiying</au><au>Zheng, Jiashi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Amino acid metabolism and MAP kinase signaling pathway play opposite roles in the regulation of ethanol production during fermentation of sugarcane molasses in budding yeast</atitle><jtitle>Genomics (San Diego, Calif.)</jtitle><addtitle>Genomics</addtitle><date>2024-03</date><risdate>2024</risdate><volume>116</volume><issue>2</issue><spage>110811</spage><pages>110811-</pages><artnum>110811</artnum><issn>0888-7543</issn><issn>1089-8646</issn><eissn>1089-8646</eissn><abstract>Sugarcane molasses is one of the main raw materials for bioethanol production, and Saccharomyces cerevisiae is the major biofuel-producing organism. In this study, a batch fermentation model has been used to examine ethanol titers of deletion mutants for all yeast nonessential genes in this yeast genome. A total of 42 genes are identified to be involved in ethanol production during fermentation of sugarcane molasses. Deletion mutants of seventeen genes show increased ethanol titers, while deletion mutants for twenty-five genes exhibit reduced ethanol titers. Two MAP kinases Hog1 and Kss1 controlling the high osmolarity and glycerol (HOG) signaling and the filamentous growth, respectively, are negatively involved in the regulation of ethanol production. In addition, twelve genes involved in amino acid metabolism are crucial for ethanol production during fermentation. Our findings provide novel targets and strategies for genetically engineering industrial yeast strains to improve ethanol titer during fermentation of sugarcane molasses.
•Screening 4797 gene mutants for ethanol fermentation titers of sugarcane molasses.•Forty-two genes involved in ethanol production in sugarcane molasses fermentation.•Seventeen mutants show increased, but 25 mutants exhibit reduced, ethanol yields.•Two MAP kinases Hog1 and Kss1 negatively regulate ethanol production.•Amino acid metabolism are crucial for ethanol production during fermentation.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>38387766</pmid><doi>10.1016/j.ygeno.2024.110811</doi><oa>free_for_read</oa></addata></record> |
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subjects | Amino acid metabolism Amino acid permease Amino Acids batch fermentation Ethanol Ethanol - metabolism ethanol production Fermentation genome genomics glycerol Hog1 Kss1 MAP kinase MAP Kinase Signaling System mitogen-activated protein kinase Molasses osmolarity Saccharomyces cerevisiae Saccharomyces cerevisiae - genetics Saccharomyces cerevisiae - metabolism Saccharomycetales - metabolism Saccharum - genetics Saccharum - metabolism sugarcane Sugarcane molasses yeasts |
title | Amino acid metabolism and MAP kinase signaling pathway play opposite roles in the regulation of ethanol production during fermentation of sugarcane molasses in budding yeast |
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