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Combined analysis of Polygonum cuspidatum transcriptome and metabolome revealed that PcMYB62, a transcription factor, responds to methyl jasmonate and inhibits resveratrol biosynthesis
A comparative transcriptomic and metabolomic analysis of Polygonum cuspidatum leaves treated with MeJA was carried out to investigate the regulatory mechanisms of its active compounds. A total of 692 metabolites and 77,198 unigenes were obtained, including 200 differentially accumulated metabolites...
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Published in: | International journal of biological macromolecules 2024-06, Vol.270 (Pt 2), p.132450, Article 132450 |
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description | A comparative transcriptomic and metabolomic analysis of Polygonum cuspidatum leaves treated with MeJA was carried out to investigate the regulatory mechanisms of its active compounds. A total of 692 metabolites and 77,198 unigenes were obtained, including 200 differentially accumulated metabolites and 6819 differentially expressed genes. We screened potential regulatory transcription factors involved in resveratrol and flavonoids biosynthesis, and successfully identified an MYB transcription factor, PcMYB62, which could significantly decrease the resveratrol content in P. cuspidatum leaves when over-expressed. PcMYB62 could directly bind to the MBS motifs in the promoter region of stilbene synthase (PcSTS) gene and repress its expression. Besides, PcMYB62 could also repress PcSTS expression and resveratrol biosynthesis in transgenic Arabidopsis thaliana. Our results provide abundant candidate genes for further investigation, and the new finding of the inhibitory role of PcMYB62 on the resveratrol biosynthesis could also potentially be used in metabolic engineering of resveratrol in P. cuspidatum. |
doi_str_mv | 10.1016/j.ijbiomac.2024.132450 |
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A total of 692 metabolites and 77,198 unigenes were obtained, including 200 differentially accumulated metabolites and 6819 differentially expressed genes. We screened potential regulatory transcription factors involved in resveratrol and flavonoids biosynthesis, and successfully identified an MYB transcription factor, PcMYB62, which could significantly decrease the resveratrol content in P. cuspidatum leaves when over-expressed. PcMYB62 could directly bind to the MBS motifs in the promoter region of stilbene synthase (PcSTS) gene and repress its expression. Besides, PcMYB62 could also repress PcSTS expression and resveratrol biosynthesis in transgenic Arabidopsis thaliana. Our results provide abundant candidate genes for further investigation, and the new finding of the inhibitory role of PcMYB62 on the resveratrol biosynthesis could also potentially be used in metabolic engineering of resveratrol in P. cuspidatum.</description><identifier>ISSN: 0141-8130</identifier><identifier>ISSN: 1879-0003</identifier><identifier>EISSN: 1879-0003</identifier><identifier>DOI: 10.1016/j.ijbiomac.2024.132450</identifier><identifier>PMID: 38772462</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Acetates - metabolism ; Acetates - pharmacology ; Acyltransferases - genetics ; Acyltransferases - metabolism ; Arabidopsis - drug effects ; Arabidopsis - genetics ; Arabidopsis - metabolism ; Arabidopsis thaliana ; biosynthesis ; Cyclopentanes - metabolism ; Cyclopentanes - pharmacology ; Fallopia japonica - genetics ; Fallopia japonica - metabolism ; flavonoids ; Gene Expression Profiling ; gene expression regulation ; Gene Expression Regulation, Plant - drug effects ; genetically modified organisms ; MeJA ; metabolites ; Metabolome ; Metabolome - drug effects ; metabolomics ; methyl jasmonate ; Oxylipins - metabolism ; Oxylipins - pharmacology ; PcMYB62 ; Plant Leaves - drug effects ; Plant Leaves - genetics ; Plant Leaves - metabolism ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plants, Genetically Modified - genetics ; Polygonum cuspidatum ; promoter regions ; Resveratrol ; Resveratrol - metabolism ; Resveratrol - pharmacology ; Reynoutria japonica ; transcription factors ; Transcription Factors - genetics ; Transcription Factors - metabolism ; Transcriptome ; Transcriptome - drug effects ; transcriptomics ; trihydroxystilbene synthase ; unigenes</subject><ispartof>International journal of biological macromolecules, 2024-06, Vol.270 (Pt 2), p.132450, Article 132450</ispartof><rights>2024 Elsevier B.V.</rights><rights>Copyright © 2024 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c348t-f1577110a48d3be4e598b746532d0d4fbf5c3bb38498cd17079ba4f91a3356393</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38772462$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lin, Fan</creatorcontrib><creatorcontrib>Chen, Jianhui</creatorcontrib><creatorcontrib>Wang, Xiaowei</creatorcontrib><creatorcontrib>Ma, Hongping</creatorcontrib><creatorcontrib>Liang, Shuang</creatorcontrib><creatorcontrib>Hu, Hongyan</creatorcontrib><creatorcontrib>Fan, Haili</creatorcontrib><creatorcontrib>Wu, Zhijun</creatorcontrib><creatorcontrib>Chai, Tuanyao</creatorcontrib><creatorcontrib>Wang, Hong</creatorcontrib><title>Combined analysis of Polygonum cuspidatum transcriptome and metabolome revealed that PcMYB62, a transcription factor, responds to methyl jasmonate and inhibits resveratrol biosynthesis</title><title>International journal of biological macromolecules</title><addtitle>Int J Biol Macromol</addtitle><description>A comparative transcriptomic and metabolomic analysis of Polygonum cuspidatum leaves treated with MeJA was carried out to investigate the regulatory mechanisms of its active compounds. A total of 692 metabolites and 77,198 unigenes were obtained, including 200 differentially accumulated metabolites and 6819 differentially expressed genes. We screened potential regulatory transcription factors involved in resveratrol and flavonoids biosynthesis, and successfully identified an MYB transcription factor, PcMYB62, which could significantly decrease the resveratrol content in P. cuspidatum leaves when over-expressed. PcMYB62 could directly bind to the MBS motifs in the promoter region of stilbene synthase (PcSTS) gene and repress its expression. Besides, PcMYB62 could also repress PcSTS expression and resveratrol biosynthesis in transgenic Arabidopsis thaliana. Our results provide abundant candidate genes for further investigation, and the new finding of the inhibitory role of PcMYB62 on the resveratrol biosynthesis could also potentially be used in metabolic engineering of resveratrol in P. cuspidatum.</description><subject>Acetates - metabolism</subject><subject>Acetates - pharmacology</subject><subject>Acyltransferases - genetics</subject><subject>Acyltransferases - metabolism</subject><subject>Arabidopsis - drug effects</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - metabolism</subject><subject>Arabidopsis thaliana</subject><subject>biosynthesis</subject><subject>Cyclopentanes - metabolism</subject><subject>Cyclopentanes - pharmacology</subject><subject>Fallopia japonica - genetics</subject><subject>Fallopia japonica - metabolism</subject><subject>flavonoids</subject><subject>Gene Expression Profiling</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Plant - drug effects</subject><subject>genetically modified organisms</subject><subject>MeJA</subject><subject>metabolites</subject><subject>Metabolome</subject><subject>Metabolome - drug effects</subject><subject>metabolomics</subject><subject>methyl jasmonate</subject><subject>Oxylipins - metabolism</subject><subject>Oxylipins - pharmacology</subject><subject>PcMYB62</subject><subject>Plant Leaves - drug effects</subject><subject>Plant Leaves - genetics</subject><subject>Plant Leaves - metabolism</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plants, Genetically Modified - genetics</subject><subject>Polygonum cuspidatum</subject><subject>promoter regions</subject><subject>Resveratrol</subject><subject>Resveratrol - metabolism</subject><subject>Resveratrol - pharmacology</subject><subject>Reynoutria japonica</subject><subject>transcription factors</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - metabolism</subject><subject>Transcriptome</subject><subject>Transcriptome - drug effects</subject><subject>transcriptomics</subject><subject>trihydroxystilbene synthase</subject><subject>unigenes</subject><issn>0141-8130</issn><issn>1879-0003</issn><issn>1879-0003</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqFkc1u1DAUhSMEokPhFSovWTSDHTuJswNGQCsV0QUsWFn-uWEcJfZgOyPlzXg8HKVF7Lryj75zrn1OUVwRvCeYNO-GvR2U9ZPU-wpXbE9oxWr8rNgR3nYlxpg-L3aYMFJyQvFF8SrGId82NeEviwvK27ZiTbUr_hz8pKwDg6ST4xJtRL5H935cfnk3T0jP8WSNTHmbgnRRB3tKfoKMGzRBksqP6zHAGeSYbdJRJnSvv_782FTXSP6nst6hXurkw3XG48k7E1Hyq8txGdEg4-SdTJu1dUerbIoreYYgU_Ajyh-Oi0tHyM98Xbzo5RjhzcN6Wfz4_On74aa8-_bl9vDhrtSU8VT2pG5bQrBk3FAFDOqOq5Y1Na0MNqxXfa2pUpSzjmtDWtx2SrK-I5LSuqEdvSzebr6n4H_PEJOYbNQwjtKBn6OgpKY5zC7H_CSKa95Q3nGe0WZDdfAxBujFKdhJhkUQLNaCxSAeCxZrwWIrOAuvHmbMagLzT_bYaAbebwDkUM4WgojagtNgbACdhPH2qRl_ATInvpQ</recordid><startdate>20240601</startdate><enddate>20240601</enddate><creator>Lin, Fan</creator><creator>Chen, Jianhui</creator><creator>Wang, Xiaowei</creator><creator>Ma, Hongping</creator><creator>Liang, Shuang</creator><creator>Hu, Hongyan</creator><creator>Fan, Haili</creator><creator>Wu, Zhijun</creator><creator>Chai, Tuanyao</creator><creator>Wang, Hong</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20240601</creationdate><title>Combined analysis of Polygonum cuspidatum transcriptome and metabolome revealed that PcMYB62, a transcription factor, responds to methyl jasmonate and inhibits resveratrol biosynthesis</title><author>Lin, Fan ; Chen, Jianhui ; Wang, Xiaowei ; Ma, Hongping ; Liang, Shuang ; Hu, Hongyan ; Fan, Haili ; Wu, Zhijun ; Chai, Tuanyao ; Wang, Hong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c348t-f1577110a48d3be4e598b746532d0d4fbf5c3bb38498cd17079ba4f91a3356393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Acetates - metabolism</topic><topic>Acetates - pharmacology</topic><topic>Acyltransferases - genetics</topic><topic>Acyltransferases - metabolism</topic><topic>Arabidopsis - drug effects</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - metabolism</topic><topic>Arabidopsis thaliana</topic><topic>biosynthesis</topic><topic>Cyclopentanes - metabolism</topic><topic>Cyclopentanes - pharmacology</topic><topic>Fallopia japonica - genetics</topic><topic>Fallopia japonica - metabolism</topic><topic>flavonoids</topic><topic>Gene Expression Profiling</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Plant - drug effects</topic><topic>genetically modified organisms</topic><topic>MeJA</topic><topic>metabolites</topic><topic>Metabolome</topic><topic>Metabolome - drug effects</topic><topic>metabolomics</topic><topic>methyl jasmonate</topic><topic>Oxylipins - metabolism</topic><topic>Oxylipins - pharmacology</topic><topic>PcMYB62</topic><topic>Plant Leaves - drug effects</topic><topic>Plant Leaves - genetics</topic><topic>Plant Leaves - metabolism</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plants, Genetically Modified - genetics</topic><topic>Polygonum cuspidatum</topic><topic>promoter regions</topic><topic>Resveratrol</topic><topic>Resveratrol - metabolism</topic><topic>Resveratrol - pharmacology</topic><topic>Reynoutria japonica</topic><topic>transcription factors</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - metabolism</topic><topic>Transcriptome</topic><topic>Transcriptome - drug effects</topic><topic>transcriptomics</topic><topic>trihydroxystilbene synthase</topic><topic>unigenes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lin, Fan</creatorcontrib><creatorcontrib>Chen, Jianhui</creatorcontrib><creatorcontrib>Wang, Xiaowei</creatorcontrib><creatorcontrib>Ma, Hongping</creatorcontrib><creatorcontrib>Liang, Shuang</creatorcontrib><creatorcontrib>Hu, Hongyan</creatorcontrib><creatorcontrib>Fan, Haili</creatorcontrib><creatorcontrib>Wu, Zhijun</creatorcontrib><creatorcontrib>Chai, Tuanyao</creatorcontrib><creatorcontrib>Wang, Hong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>International journal of biological macromolecules</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lin, Fan</au><au>Chen, Jianhui</au><au>Wang, Xiaowei</au><au>Ma, Hongping</au><au>Liang, Shuang</au><au>Hu, Hongyan</au><au>Fan, Haili</au><au>Wu, Zhijun</au><au>Chai, Tuanyao</au><au>Wang, Hong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Combined analysis of Polygonum cuspidatum transcriptome and metabolome revealed that PcMYB62, a transcription factor, responds to methyl jasmonate and inhibits resveratrol biosynthesis</atitle><jtitle>International journal of biological macromolecules</jtitle><addtitle>Int J Biol Macromol</addtitle><date>2024-06-01</date><risdate>2024</risdate><volume>270</volume><issue>Pt 2</issue><spage>132450</spage><pages>132450-</pages><artnum>132450</artnum><issn>0141-8130</issn><issn>1879-0003</issn><eissn>1879-0003</eissn><abstract>A comparative transcriptomic and metabolomic analysis of Polygonum cuspidatum leaves treated with MeJA was carried out to investigate the regulatory mechanisms of its active compounds. A total of 692 metabolites and 77,198 unigenes were obtained, including 200 differentially accumulated metabolites and 6819 differentially expressed genes. We screened potential regulatory transcription factors involved in resveratrol and flavonoids biosynthesis, and successfully identified an MYB transcription factor, PcMYB62, which could significantly decrease the resveratrol content in P. cuspidatum leaves when over-expressed. PcMYB62 could directly bind to the MBS motifs in the promoter region of stilbene synthase (PcSTS) gene and repress its expression. Besides, PcMYB62 could also repress PcSTS expression and resveratrol biosynthesis in transgenic Arabidopsis thaliana. Our results provide abundant candidate genes for further investigation, and the new finding of the inhibitory role of PcMYB62 on the resveratrol biosynthesis could also potentially be used in metabolic engineering of resveratrol in P. cuspidatum.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>38772462</pmid><doi>10.1016/j.ijbiomac.2024.132450</doi></addata></record> |
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subjects | Acetates - metabolism Acetates - pharmacology Acyltransferases - genetics Acyltransferases - metabolism Arabidopsis - drug effects Arabidopsis - genetics Arabidopsis - metabolism Arabidopsis thaliana biosynthesis Cyclopentanes - metabolism Cyclopentanes - pharmacology Fallopia japonica - genetics Fallopia japonica - metabolism flavonoids Gene Expression Profiling gene expression regulation Gene Expression Regulation, Plant - drug effects genetically modified organisms MeJA metabolites Metabolome Metabolome - drug effects metabolomics methyl jasmonate Oxylipins - metabolism Oxylipins - pharmacology PcMYB62 Plant Leaves - drug effects Plant Leaves - genetics Plant Leaves - metabolism Plant Proteins - genetics Plant Proteins - metabolism Plants, Genetically Modified - genetics Polygonum cuspidatum promoter regions Resveratrol Resveratrol - metabolism Resveratrol - pharmacology Reynoutria japonica transcription factors Transcription Factors - genetics Transcription Factors - metabolism Transcriptome Transcriptome - drug effects transcriptomics trihydroxystilbene synthase unigenes |
title | Combined analysis of Polygonum cuspidatum transcriptome and metabolome revealed that PcMYB62, a transcription factor, responds to methyl jasmonate and inhibits resveratrol biosynthesis |
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