ArrayNorm: comprehensive normalization and analysis of microarray data

ArrayNorm is a user-friendly, versatile and platform-independent Java application for the visualization, normalization and analysis of two-color microarray data. A variety of normalization options were implemented to remove the systematic and random errors in the data, taking into account the experi...

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Bibliographic Details
Published in:Bioinformatics 2004-08, Vol.20 (12), p.1971-1973
Main Authors: Pieler, R., Sanchez-Cabo, F., Hackl, H., Thallinger, G. G., Trajanoski, Z.
Format: Article
Language:English
Subjects:
Algorithms
Biological and medical sciences
Fundamental and applied biological sciences. Psychology
Gene Expression Profiling - methods
Gene Expression Profiling - standards
General aspects
Internet
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Oligonucleotide Array Sequence Analysis - methods
Oligonucleotide Array Sequence Analysis - standards
Sequence Analysis, DNA - methods
Software
User-Computer Interface
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Description
Summary:ArrayNorm is a user-friendly, versatile and platform-independent Java application for the visualization, normalization and analysis of two-color microarray data. A variety of normalization options were implemented to remove the systematic and random errors in the data, taking into account the experimental design and the particularities of every slide. In addition, ArrayNorm provides a module for statistical identification of genes with significant changes in expression. Availability: The package is freely available for academic and non-profit institutions from http://genome.tugraz.at
ISSN:1367-4803
1460-2059
1367-4811
DOI:10.1093/bioinformatics/bth174