Imprinted polymer layer for recognizing double-stranded DNA

A method of preparing a thin polymer layer able to recognize double-stranded DNA (dsDNA) was developed by using 2-vinyl-4,6-diamino-1,3,5-triazine (VDAT) as a functional monomer for creating a DNA-imprinted polymer. The formation of hydrogen bonds between VDAT and A–T base pairs in dsDNA was confirm...

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Bibliographic Details
Published in:Biosensors & bioelectronics 2004-12, Vol.20 (6), p.1091-1097
Main Authors: Slinchenko, Olena, Rachkov, Alexandre, Miyachi, Hirotaka, Ogiso, Masayo, Minoura, Norihiko
Format: Article
Language:English
Subjects:
2-Vinyl-4,6-diamino-1,3,5-triazine
Acrylic Resins - chemistry
Binding Sites
Biological and medical sciences
Biosensing Techniques - instrumentation
Biosensing Techniques - methods
Biotechnology
Coated Materials, Biocompatible - chemistry
DNA, Bacterial - analysis
DNA, Bacterial - chemistry
dsDNA recognition
Fundamental and applied biological sciences. Psychology
Materials Testing
Methods. Procedures. Technologies
Molecularly imprinted polymer
Others
Surface plasmon resonance
Surface Plasmon Resonance - methods
Surface Properties
Triazines - chemistry
Various methods and equipments
Verotoxin DNA
Vinyl Compounds - chemistry
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Summary:A method of preparing a thin polymer layer able to recognize double-stranded DNA (dsDNA) was developed by using 2-vinyl-4,6-diamino-1,3,5-triazine (VDAT) as a functional monomer for creating a DNA-imprinted polymer. The formation of hydrogen bonds between VDAT and A–T base pairs in dsDNA was confirmed by measuring the effects of VDAT on the melting point and the NMR and CD spectra of dsDNA. An imprinted polymer that can recognize dsDNA of the verotoxin gene was prepared by polymerizing VDAT, acrylamide, a crosslinking agent, and the template verotoxin dsDNA on a silanized glass surface. The specificity of this polymer layer for binding verotoxin dsDNA was investigated by using fluorescent-labelled dsDNAs. The fluorescence intensity of the polymer layer after binding verotoxin dsDNA was twice as high as after binding oligo(dG)–oligo(dC), indicating that verotoxin dsDNA was preferentially bound to the polymer imprinted with verotoxin dsDNA. The kinetics of verotoxin dsDNA binding to the imprinted polymer were analyzed by surface plasmon resonance measurements. The dissociation constant ( K D) was low, of the order of 10 −9 M.
ISSN:0956-5663
1873-4235
DOI:10.1016/j.bios.2004.06.027