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Impact of cholesterol on voids in phospholipid membranes
Free volume pockets or voids are important to many biological processes in cell membranes. Free volume fluctuations are a prerequisite for diffusion of lipids and other macromolecules in lipid bilayers. Permeation of small solutes across a membrane, as well as diffusion of solutes in the membrane in...
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Published in: | The Journal of chemical physics 2004-12, Vol.121 (24), p.12676-12689 |
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container_end_page | 12689 |
container_issue | 24 |
container_start_page | 12676 |
container_title | The Journal of chemical physics |
container_volume | 121 |
creator | Falck, Emma Patra, Michael Karttunen, Mikko Hyvönen, Marja T Vattulainen, Ilpo |
description | Free volume pockets or voids are important to many biological processes in cell membranes. Free volume fluctuations are a prerequisite for diffusion of lipids and other macromolecules in lipid bilayers. Permeation of small solutes across a membrane, as well as diffusion of solutes in the membrane interior are further examples of phenomena where voids and their properties play a central role. Cholesterol has been suggested to change the structure and function of membranes by altering their free volume properties. We study the effect of cholesterol on the properties of voids in dipalmitoylphosphatidylcholine (DPPC) bilayers by means of atomistic molecular dynamics simulations. We find that an increasing cholesterol concentration reduces the total amount of free volume in a bilayer. The effect of cholesterol on individual voids is most prominent in the region where the steroid ring structures of cholesterol molecules are located. Here a growing cholesterol content reduces the number of voids, completely removing voids of the size of a cholesterol molecule. The voids also become more elongated. The broad orientational distribution of voids observed in pure DPPC is, with a 30% molar concentration of cholesterol, replaced by a distribution where orientation along the bilayer normal is favored. Our results suggest that instead of being uniformly distributed to the whole bilayer, these effects are localized to the close vicinity of cholesterol molecules. |
doi_str_mv | 10.1063/1.1824033 |
format | article |
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Free volume fluctuations are a prerequisite for diffusion of lipids and other macromolecules in lipid bilayers. Permeation of small solutes across a membrane, as well as diffusion of solutes in the membrane interior are further examples of phenomena where voids and their properties play a central role. Cholesterol has been suggested to change the structure and function of membranes by altering their free volume properties. We study the effect of cholesterol on the properties of voids in dipalmitoylphosphatidylcholine (DPPC) bilayers by means of atomistic molecular dynamics simulations. We find that an increasing cholesterol concentration reduces the total amount of free volume in a bilayer. The effect of cholesterol on individual voids is most prominent in the region where the steroid ring structures of cholesterol molecules are located. Here a growing cholesterol content reduces the number of voids, completely removing voids of the size of a cholesterol molecule. The voids also become more elongated. The broad orientational distribution of voids observed in pure DPPC is, with a 30% molar concentration of cholesterol, replaced by a distribution where orientation along the bilayer normal is favored. Our results suggest that instead of being uniformly distributed to the whole bilayer, these effects are localized to the close vicinity of cholesterol molecules.</description><identifier>ISSN: 0021-9606</identifier><identifier>EISSN: 1089-7690</identifier><identifier>DOI: 10.1063/1.1824033</identifier><identifier>PMID: 15606294</identifier><language>eng</language><publisher>United States</publisher><subject>Algorithms ; Cholesterol - chemistry ; Computer Simulation ; Diffusion ; Lipid Bilayers - chemistry ; Membrane Fluidity ; Membranes - chemistry ; Molecular Conformation ; Principal Component Analysis</subject><ispartof>The Journal of chemical physics, 2004-12, Vol.121 (24), p.12676-12689</ispartof><rights>(c) 2004 American Institute of Physics.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c349t-b82b40a4f009d2ce75e369a109e1d4a50a5f7c33ed24c681c62a2fb17e61aba43</citedby><cites>FETCH-LOGICAL-c349t-b82b40a4f009d2ce75e369a109e1d4a50a5f7c33ed24c681c62a2fb17e61aba43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,782,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15606294$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Falck, Emma</creatorcontrib><creatorcontrib>Patra, Michael</creatorcontrib><creatorcontrib>Karttunen, Mikko</creatorcontrib><creatorcontrib>Hyvönen, Marja T</creatorcontrib><creatorcontrib>Vattulainen, Ilpo</creatorcontrib><title>Impact of cholesterol on voids in phospholipid membranes</title><title>The Journal of chemical physics</title><addtitle>J Chem Phys</addtitle><description>Free volume pockets or voids are important to many biological processes in cell membranes. Free volume fluctuations are a prerequisite for diffusion of lipids and other macromolecules in lipid bilayers. Permeation of small solutes across a membrane, as well as diffusion of solutes in the membrane interior are further examples of phenomena where voids and their properties play a central role. Cholesterol has been suggested to change the structure and function of membranes by altering their free volume properties. We study the effect of cholesterol on the properties of voids in dipalmitoylphosphatidylcholine (DPPC) bilayers by means of atomistic molecular dynamics simulations. We find that an increasing cholesterol concentration reduces the total amount of free volume in a bilayer. The effect of cholesterol on individual voids is most prominent in the region where the steroid ring structures of cholesterol molecules are located. Here a growing cholesterol content reduces the number of voids, completely removing voids of the size of a cholesterol molecule. The voids also become more elongated. The broad orientational distribution of voids observed in pure DPPC is, with a 30% molar concentration of cholesterol, replaced by a distribution where orientation along the bilayer normal is favored. Our results suggest that instead of being uniformly distributed to the whole bilayer, these effects are localized to the close vicinity of cholesterol molecules.</description><subject>Algorithms</subject><subject>Cholesterol - chemistry</subject><subject>Computer Simulation</subject><subject>Diffusion</subject><subject>Lipid Bilayers - chemistry</subject><subject>Membrane Fluidity</subject><subject>Membranes - chemistry</subject><subject>Molecular Conformation</subject><subject>Principal Component Analysis</subject><issn>0021-9606</issn><issn>1089-7690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><recordid>eNpFkFFLwzAUhYMobk4f_AOSJ8GHznuTNG0eZUwdDHzR55Cmt6zSLjXZBP-9lRV8uBy4fBwOH2O3CEsELR9xiaVQIOUZmyOUJiu0gXM2BxCYGQ16xq5S-gQALIS6ZDPMx6cwas7KTT84f-Ch4X4XOkoHiqHjYc-_Q1sn3u75sAtpvK4d2pr31FfR7Slds4vGdYluplywj-f1--o12769bFZP28xLZQ5ZVYpKgVMNgKmFpyInqY1DMIS1cjm4vCm8lFQL5XWJXgsnmgoL0ugqp-SC3Z96hxi-juM-27fJU9eNI8IxWV1gadDgCD6cQB9DSpEaO8S2d_HHItg_TRbtpGlk76bSY9VT_U9OXuQvVlxhRA</recordid><startdate>20041222</startdate><enddate>20041222</enddate><creator>Falck, Emma</creator><creator>Patra, Michael</creator><creator>Karttunen, Mikko</creator><creator>Hyvönen, Marja T</creator><creator>Vattulainen, Ilpo</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20041222</creationdate><title>Impact of cholesterol on voids in phospholipid membranes</title><author>Falck, Emma ; Patra, Michael ; Karttunen, Mikko ; Hyvönen, Marja T ; Vattulainen, Ilpo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c349t-b82b40a4f009d2ce75e369a109e1d4a50a5f7c33ed24c681c62a2fb17e61aba43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Algorithms</topic><topic>Cholesterol - chemistry</topic><topic>Computer Simulation</topic><topic>Diffusion</topic><topic>Lipid Bilayers - chemistry</topic><topic>Membrane Fluidity</topic><topic>Membranes - chemistry</topic><topic>Molecular Conformation</topic><topic>Principal Component Analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Falck, Emma</creatorcontrib><creatorcontrib>Patra, Michael</creatorcontrib><creatorcontrib>Karttunen, Mikko</creatorcontrib><creatorcontrib>Hyvönen, Marja T</creatorcontrib><creatorcontrib>Vattulainen, Ilpo</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of chemical physics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Falck, Emma</au><au>Patra, Michael</au><au>Karttunen, Mikko</au><au>Hyvönen, Marja T</au><au>Vattulainen, Ilpo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Impact of cholesterol on voids in phospholipid membranes</atitle><jtitle>The Journal of chemical physics</jtitle><addtitle>J Chem Phys</addtitle><date>2004-12-22</date><risdate>2004</risdate><volume>121</volume><issue>24</issue><spage>12676</spage><epage>12689</epage><pages>12676-12689</pages><issn>0021-9606</issn><eissn>1089-7690</eissn><abstract>Free volume pockets or voids are important to many biological processes in cell membranes. Free volume fluctuations are a prerequisite for diffusion of lipids and other macromolecules in lipid bilayers. Permeation of small solutes across a membrane, as well as diffusion of solutes in the membrane interior are further examples of phenomena where voids and their properties play a central role. Cholesterol has been suggested to change the structure and function of membranes by altering their free volume properties. We study the effect of cholesterol on the properties of voids in dipalmitoylphosphatidylcholine (DPPC) bilayers by means of atomistic molecular dynamics simulations. We find that an increasing cholesterol concentration reduces the total amount of free volume in a bilayer. The effect of cholesterol on individual voids is most prominent in the region where the steroid ring structures of cholesterol molecules are located. Here a growing cholesterol content reduces the number of voids, completely removing voids of the size of a cholesterol molecule. The voids also become more elongated. The broad orientational distribution of voids observed in pure DPPC is, with a 30% molar concentration of cholesterol, replaced by a distribution where orientation along the bilayer normal is favored. Our results suggest that instead of being uniformly distributed to the whole bilayer, these effects are localized to the close vicinity of cholesterol molecules.</abstract><cop>United States</cop><pmid>15606294</pmid><doi>10.1063/1.1824033</doi><tpages>14</tpages></addata></record> |
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source | American Institute of Physics:Jisc Collections:Transitional Journals Agreement 2021-23 (Reading list); AIP_美国物理联合会现刊(与NSTL共建) |
subjects | Algorithms Cholesterol - chemistry Computer Simulation Diffusion Lipid Bilayers - chemistry Membrane Fluidity Membranes - chemistry Molecular Conformation Principal Component Analysis |
title | Impact of cholesterol on voids in phospholipid membranes |
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