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Taxonomic characterization and plant colonizing abilities of some bacteria related to Bacillus amyloliquefaciens and Bacillus subtilis
The phylogenetic relationships of 17 Bacillus strains isolated from plants and soil were determined from partial sequences of genes encoding 16S rRNA, gyraseA ( gyrA) and the cheA histidine kinase. Five strains were closely related to Bacillus subtilis subsp. subtilis, three strains were more closel...
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| Published in: | FEMS microbiology ecology 2004-05, Vol.48 (2), p.249-259 |
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| container_title | FEMS microbiology ecology |
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| creator | Reva, Oleg N. Dixelius, Christina Meijer, Johan Priest, Fergus G. |
| description | The phylogenetic relationships of 17
Bacillus strains isolated from plants and soil were determined from partial sequences of genes encoding 16S rRNA, gyraseA (
gyrA) and the
cheA histidine kinase. Five strains were closely related to
Bacillus subtilis subsp.
subtilis, three strains were more closely related to
B. subtilis subsp.
spizizeni and two strains were identified as
B. mojavensis. The remaining seven strains formed a cluster closely related to, but distinct from,
Bacillus amyloliquefaciens. Some of these strains formed red-pigmented colonies. The abilities of selected strains to survive in the rhizosphere and to colonize plants were studied using oilseed rape (
Brassica napus), barley (
Hordeum vulgare) and thale cress (
Arabidopsis thaliana) as model plants. It was shown by following the titre of bacteria in seedlings and by scanning electron microscopy that survival of
Bacillus cells on the roots of seedlings during the first week after treatment of seeds with spore suspensions was crucial for colonization of the rhizosphere and for biocontrol activity. The group of strains related to
B. amyloliquefaciens were generally better adapted to colonization of the rhizosphere of plants than other members of the
B. subtilis group and could be considered a distinct ecotype of
B. amyloliquefaciens. Bacteria in this taxon could be recognized on the basis of amplification of a PCR product with primers directed to the
tetB(L) locus but no product with primers directed to the α-amylase gene of
B.amyloliquefaciens sensu stricto. |
| doi_str_mv | 10.1016/j.femsec.2004.02.003 |
| format | article |
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Bacillus strains isolated from plants and soil were determined from partial sequences of genes encoding 16S rRNA, gyraseA (
gyrA) and the
cheA histidine kinase. Five strains were closely related to
Bacillus subtilis subsp.
subtilis, three strains were more closely related to
B. subtilis subsp.
spizizeni and two strains were identified as
B. mojavensis. The remaining seven strains formed a cluster closely related to, but distinct from,
Bacillus amyloliquefaciens. Some of these strains formed red-pigmented colonies. The abilities of selected strains to survive in the rhizosphere and to colonize plants were studied using oilseed rape (
Brassica napus), barley (
Hordeum vulgare) and thale cress (
Arabidopsis thaliana) as model plants. It was shown by following the titre of bacteria in seedlings and by scanning electron microscopy that survival of
Bacillus cells on the roots of seedlings during the first week after treatment of seeds with spore suspensions was crucial for colonization of the rhizosphere and for biocontrol activity. The group of strains related to
B. amyloliquefaciens were generally better adapted to colonization of the rhizosphere of plants than other members of the
B. subtilis group and could be considered a distinct ecotype of
B. amyloliquefaciens. Bacteria in this taxon could be recognized on the basis of amplification of a PCR product with primers directed to the
tetB(L) locus but no product with primers directed to the α-amylase gene of
B.amyloliquefaciens sensu stricto.</description><identifier>ISSN: 0168-6496</identifier><identifier>EISSN: 1574-6941</identifier><identifier>DOI: 10.1016/j.femsec.2004.02.003</identifier><identifier>PMID: 19712408</identifier><language>eng</language><publisher>Oxford, UK: Elsevier B.V</publisher><subject>16S rRNA ; Arabidopsis - microbiology ; Bacillus ; Bacillus - classification ; Bacillus - genetics ; Bacillus - isolation & purification ; Bacillus - physiology ; Bacillus amyloliquefaciens ; Bacillus mojavensis ; Bacillus subtilis ; Bacteria ; Bacterial Proteins - genetics ; Bacteriology ; Barley ; Biological and medical sciences ; Biological control ; Brassica ; Brassica - microbiology ; Brassica napus ; cheA ; CheA protein ; Cluster Analysis ; Colonization ; DNA Gyrase - genetics ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Ecology ; Fundamental and applied biological sciences. Psychology ; Gene sequencing ; gyrA ; Histidine ; Histidine Kinase ; Hordeum - microbiology ; Hordeum vulgare ; Identification ; Kinases ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Phylogeny ; Pigments, Biological - biosynthesis ; Plant colonization ; Protein Kinases - genetics ; Rapeseed ; Rhizosphere ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Scanning electron microscopy ; Seedlings ; Seeds ; Sequence Analysis, DNA ; Soil Microbiology ; Strains (organisms) ; α-Amylase</subject><ispartof>FEMS microbiology ecology, 2004-05, Vol.48 (2), p.249-259</ispartof><rights>2004 Federation of European Microbiological Societies</rights><rights>2004 Federation of European Microbiological Societies. Published by Elsevier Science B.V. All rights reserved. 2004</rights><rights>2004 INIST-CNRS</rights><rights>2004 Federation of European Microbiological Societies. Published by Elsevier Science B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c6029-374003207b24aa566c3d7162eac1342313b187a57c838b6e0b04d2c71eafb4b33</citedby><cites>FETCH-LOGICAL-c6029-374003207b24aa566c3d7162eac1342313b187a57c838b6e0b04d2c71eafb4b33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,27905,27906</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15723742$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19712408$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Reva, Oleg N.</creatorcontrib><creatorcontrib>Dixelius, Christina</creatorcontrib><creatorcontrib>Meijer, Johan</creatorcontrib><creatorcontrib>Priest, Fergus G.</creatorcontrib><title>Taxonomic characterization and plant colonizing abilities of some bacteria related to Bacillus amyloliquefaciens and Bacillus subtilis</title><title>FEMS microbiology ecology</title><addtitle>FEMS Microbiol Ecol</addtitle><description>The phylogenetic relationships of 17
Bacillus strains isolated from plants and soil were determined from partial sequences of genes encoding 16S rRNA, gyraseA (
gyrA) and the
cheA histidine kinase. Five strains were closely related to
Bacillus subtilis subsp.
subtilis, three strains were more closely related to
B. subtilis subsp.
spizizeni and two strains were identified as
B. mojavensis. The remaining seven strains formed a cluster closely related to, but distinct from,
Bacillus amyloliquefaciens. Some of these strains formed red-pigmented colonies. The abilities of selected strains to survive in the rhizosphere and to colonize plants were studied using oilseed rape (
Brassica napus), barley (
Hordeum vulgare) and thale cress (
Arabidopsis thaliana) as model plants. It was shown by following the titre of bacteria in seedlings and by scanning electron microscopy that survival of
Bacillus cells on the roots of seedlings during the first week after treatment of seeds with spore suspensions was crucial for colonization of the rhizosphere and for biocontrol activity. The group of strains related to
B. amyloliquefaciens were generally better adapted to colonization of the rhizosphere of plants than other members of the
B. subtilis group and could be considered a distinct ecotype of
B. amyloliquefaciens. Bacteria in this taxon could be recognized on the basis of amplification of a PCR product with primers directed to the
tetB(L) locus but no product with primers directed to the α-amylase gene of
B.amyloliquefaciens sensu stricto.</description><subject>16S rRNA</subject><subject>Arabidopsis - microbiology</subject><subject>Bacillus</subject><subject>Bacillus - classification</subject><subject>Bacillus - genetics</subject><subject>Bacillus - isolation & purification</subject><subject>Bacillus - physiology</subject><subject>Bacillus amyloliquefaciens</subject><subject>Bacillus mojavensis</subject><subject>Bacillus subtilis</subject><subject>Bacteria</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacteriology</subject><subject>Barley</subject><subject>Biological and medical sciences</subject><subject>Biological control</subject><subject>Brassica</subject><subject>Brassica - microbiology</subject><subject>Brassica napus</subject><subject>cheA</subject><subject>CheA protein</subject><subject>Cluster Analysis</subject><subject>Colonization</subject><subject>DNA Gyrase - genetics</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Ecology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene sequencing</subject><subject>gyrA</subject><subject>Histidine</subject><subject>Histidine Kinase</subject><subject>Hordeum - microbiology</subject><subject>Hordeum vulgare</subject><subject>Identification</subject><subject>Kinases</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Pigments, Biological - biosynthesis</subject><subject>Plant colonization</subject><subject>Protein Kinases - genetics</subject><subject>Rapeseed</subject><subject>Rhizosphere</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Scanning electron microscopy</subject><subject>Seedlings</subject><subject>Seeds</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Strains (organisms)</subject><subject>α-Amylase</subject><issn>0168-6496</issn><issn>1574-6941</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><recordid>eNqNkc1u1DAUhSMEokPhDRCyhGCX1H-xkw0SVC0gFbEpa-vGuQGPnHiwE2D6ADw3HjKiEgvoypL9neN77imKp4xWjDJ1tq0GHBPailMqK8orSsW9YsNqLUvVSna_2GSsKZVs1UnxKKUtpawWkj4sTlirGZe02RQ_r-FHmMLoLLFfIIKdMbobmF2YCEw92XmYZmKDD5O7cdNnAp3zbnaYSBhICiOSbhUBiehhxp7MgbwB67xfEoFx74N3Xxcc8hVO6bfrn-e0dHP2S4-LBwP4hE-O52nx6fLi-vxdefXx7fvz11elVZS3pdAyp-RUd1wC1EpZ0WumOIJlQnLBRMcaDbW2jWg6hbSjsudWM4Shk50Qp8XL1XcXQ54pzWZ0yaLPKTEsySgtGJWa_Rdkuq3zApsMPv8L3IYlTjmEyfNQpVvJD3ZypWwMKUUczC66EeLeMGoOdZqtWes0hzoN5SYHzbJnR_OlG7G_FR37y8CLIwDJgh8iTNalW67WPO-MZ65Zue_O4_5On5vLiw9ctll6tkrDsrvr1K9WBeYmvzmMJh2qt9i7iHY2fXD_NvgFsgvhhw</recordid><startdate>200405</startdate><enddate>200405</enddate><creator>Reva, Oleg N.</creator><creator>Dixelius, Christina</creator><creator>Meijer, Johan</creator><creator>Priest, Fergus G.</creator><general>Elsevier B.V</general><general>Blackwell Publishing Ltd</general><general>Blackwell</general><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>200405</creationdate><title>Taxonomic characterization and plant colonizing abilities of some bacteria related to Bacillus amyloliquefaciens and Bacillus subtilis</title><author>Reva, Oleg N. ; Dixelius, Christina ; Meijer, Johan ; Priest, Fergus G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6029-374003207b24aa566c3d7162eac1342313b187a57c838b6e0b04d2c71eafb4b33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>16S rRNA</topic><topic>Arabidopsis - microbiology</topic><topic>Bacillus</topic><topic>Bacillus - classification</topic><topic>Bacillus - genetics</topic><topic>Bacillus - isolation & purification</topic><topic>Bacillus - physiology</topic><topic>Bacillus amyloliquefaciens</topic><topic>Bacillus mojavensis</topic><topic>Bacillus subtilis</topic><topic>Bacteria</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacteriology</topic><topic>Barley</topic><topic>Biological and medical sciences</topic><topic>Biological control</topic><topic>Brassica</topic><topic>Brassica - microbiology</topic><topic>Brassica napus</topic><topic>cheA</topic><topic>CheA protein</topic><topic>Cluster Analysis</topic><topic>Colonization</topic><topic>DNA Gyrase - genetics</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Ecology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene sequencing</topic><topic>gyrA</topic><topic>Histidine</topic><topic>Histidine Kinase</topic><topic>Hordeum - microbiology</topic><topic>Hordeum vulgare</topic><topic>Identification</topic><topic>Kinases</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Pigments, Biological - biosynthesis</topic><topic>Plant colonization</topic><topic>Protein Kinases - genetics</topic><topic>Rapeseed</topic><topic>Rhizosphere</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Scanning electron microscopy</topic><topic>Seedlings</topic><topic>Seeds</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Strains (organisms)</topic><topic>α-Amylase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Reva, Oleg N.</creatorcontrib><creatorcontrib>Dixelius, Christina</creatorcontrib><creatorcontrib>Meijer, Johan</creatorcontrib><creatorcontrib>Priest, Fergus G.</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biological Sciences</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>FEMS microbiology ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Reva, Oleg N.</au><au>Dixelius, Christina</au><au>Meijer, Johan</au><au>Priest, Fergus G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Taxonomic characterization and plant colonizing abilities of some bacteria related to Bacillus amyloliquefaciens and Bacillus subtilis</atitle><jtitle>FEMS microbiology ecology</jtitle><addtitle>FEMS Microbiol Ecol</addtitle><date>2004-05</date><risdate>2004</risdate><volume>48</volume><issue>2</issue><spage>249</spage><epage>259</epage><pages>249-259</pages><issn>0168-6496</issn><eissn>1574-6941</eissn><abstract>The phylogenetic relationships of 17
Bacillus strains isolated from plants and soil were determined from partial sequences of genes encoding 16S rRNA, gyraseA (
gyrA) and the
cheA histidine kinase. Five strains were closely related to
Bacillus subtilis subsp.
subtilis, three strains were more closely related to
B. subtilis subsp.
spizizeni and two strains were identified as
B. mojavensis. The remaining seven strains formed a cluster closely related to, but distinct from,
Bacillus amyloliquefaciens. Some of these strains formed red-pigmented colonies. The abilities of selected strains to survive in the rhizosphere and to colonize plants were studied using oilseed rape (
Brassica napus), barley (
Hordeum vulgare) and thale cress (
Arabidopsis thaliana) as model plants. It was shown by following the titre of bacteria in seedlings and by scanning electron microscopy that survival of
Bacillus cells on the roots of seedlings during the first week after treatment of seeds with spore suspensions was crucial for colonization of the rhizosphere and for biocontrol activity. The group of strains related to
B. amyloliquefaciens were generally better adapted to colonization of the rhizosphere of plants than other members of the
B. subtilis group and could be considered a distinct ecotype of
B. amyloliquefaciens. Bacteria in this taxon could be recognized on the basis of amplification of a PCR product with primers directed to the
tetB(L) locus but no product with primers directed to the α-amylase gene of
B.amyloliquefaciens sensu stricto.</abstract><cop>Oxford, UK</cop><pub>Elsevier B.V</pub><pmid>19712408</pmid><doi>10.1016/j.femsec.2004.02.003</doi><tpages>11</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0168-6496 |
| ispartof | FEMS microbiology ecology, 2004-05, Vol.48 (2), p.249-259 |
| issn | 0168-6496 1574-6941 |
| language | eng |
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| source | Oxford Open Access Journals |
| subjects | 16S rRNA Arabidopsis - microbiology Bacillus Bacillus - classification Bacillus - genetics Bacillus - isolation & purification Bacillus - physiology Bacillus amyloliquefaciens Bacillus mojavensis Bacillus subtilis Bacteria Bacterial Proteins - genetics Bacteriology Barley Biological and medical sciences Biological control Brassica Brassica - microbiology Brassica napus cheA CheA protein Cluster Analysis Colonization DNA Gyrase - genetics DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Ecology Fundamental and applied biological sciences. Psychology Gene sequencing gyrA Histidine Histidine Kinase Hordeum - microbiology Hordeum vulgare Identification Kinases Microbiology Miscellaneous Molecular Sequence Data Phylogeny Pigments, Biological - biosynthesis Plant colonization Protein Kinases - genetics Rapeseed Rhizosphere RNA, Ribosomal, 16S - genetics rRNA 16S Scanning electron microscopy Seedlings Seeds Sequence Analysis, DNA Soil Microbiology Strains (organisms) α-Amylase |
| title | Taxonomic characterization and plant colonizing abilities of some bacteria related to Bacillus amyloliquefaciens and Bacillus subtilis |
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