Complete genomic nucleotide sequence and analysis of the temperate bacteriophage VWB

The entire double-stranded DNA genome of the Streptomyces venezuelae bacteriophage VWB was sequenced and analyzed. Its size is 49,220 bp with an overall molar G + C content of 71.2 mol%. Sixty-one potential open reading frames were identified and annotated using several complementary bioinformatics...

Full description

Saved in:
Bibliographic Details
Published in:Virology (New York, N.Y.) N.Y.), 2005-01, Vol.331 (2), p.325-337
Main Authors: Van Dessel, W., Van Mellaert, L., Liesegang, H., Raasch, C., DeKeersmaeker, S., Geukens, N., Lammertyn, E., Streit, W., Anné, J.
Format: Article
Language:English
Subjects:
Amino Acid Sequence
Bacteriophage
Bacteriophages - genetics
Computational Biology
Genes, Viral
Genome sequence
Genome, Viral
Molecular Sequence Data
Open Reading Frames
Sequence analysis
Sequence Analysis, DNA
Streptomyces
Streptomyces - genetics
Streptomyces - virology
Streptomyces venezuelae
Viral Proteins - genetics
Virus Integration
VWB
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c433t-bc82c08bf68506e55c367743f9dbc4b49fce985c4c99e4240add6df2e09821563
cites cdi_FETCH-LOGICAL-c433t-bc82c08bf68506e55c367743f9dbc4b49fce985c4c99e4240add6df2e09821563
container_end_page 337
container_issue 2
container_start_page 325
container_title Virology (New York, N.Y.)
container_volume 331
creator Van Dessel, W.
Van Mellaert, L.
Liesegang, H.
Raasch, C.
DeKeersmaeker, S.
Geukens, N.
Lammertyn, E.
Streit, W.
Anné, J.
description The entire double-stranded DNA genome of the Streptomyces venezuelae bacteriophage VWB was sequenced and analyzed. Its size is 49,220 bp with an overall molar G + C content of 71.2 mol%. Sixty-one potential open reading frames were identified and annotated using several complementary bioinformatics tools. Clusters of functionally related putative genes were defined, supporting a refined version of the modular theory of phage evolution.
doi_str_mv 10.1016/j.virol.2004.10.028
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_67339480</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0042682204007081</els_id><sourcerecordid>67339480</sourcerecordid><originalsourceid>FETCH-LOGICAL-c433t-bc82c08bf68506e55c367743f9dbc4b49fce985c4c99e4240add6df2e09821563</originalsourceid><addsrcrecordid>eNqFkE9PwyAYh4nR6Jx-AhPTk7dOCpTCwYMu_ktMvEw9EgpvlaUtFbolfnuZW-JND4Tw8vzeFx6Ezgo8K3DBL5eztQu-nRGMWarMMBF7aFJgyXNMWbGPJumC5FwQcoSOY1zidK4qfIiOipITWVXlBC3mvhtaGCF7h953zmT9yrTgR2chi_C5gt5Apnublm6_oouZb7LxA7IRugGCTslamxGC88OHfofs9e3mBB00uo1wutun6OXudjF_yJ-e7x_n10-5YZSOeW0EMVjUDRcl5lCWhvKqYrSRtjasZrIxIEVpmJESGGFYW8ttQwBLQdIX6BRdbPsOwaeXxlF1LhpoW92DX0XFK0olE_hfsKhEKUpKE0i3oAk-xgCNGoLrdPhSBVYb62qpfqyrjfVNMVlPqfNd-1Xdgf3N7DQn4GoLQLKxdhBUNG5j1roAZlTWuz8HfANsPJTb</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>17858533</pqid></control><display><type>article</type><title>Complete genomic nucleotide sequence and analysis of the temperate bacteriophage VWB</title><source>Elsevier:Jisc Collections:Elsevier Read and Publish Agreement 2022-2024:Freedom Collection (Reading list)</source><creator>Van Dessel, W. ; Van Mellaert, L. ; Liesegang, H. ; Raasch, C. ; DeKeersmaeker, S. ; Geukens, N. ; Lammertyn, E. ; Streit, W. ; Anné, J.</creator><creatorcontrib>Van Dessel, W. ; Van Mellaert, L. ; Liesegang, H. ; Raasch, C. ; DeKeersmaeker, S. ; Geukens, N. ; Lammertyn, E. ; Streit, W. ; Anné, J.</creatorcontrib><description>The entire double-stranded DNA genome of the Streptomyces venezuelae bacteriophage VWB was sequenced and analyzed. Its size is 49,220 bp with an overall molar G + C content of 71.2 mol%. Sixty-one potential open reading frames were identified and annotated using several complementary bioinformatics tools. Clusters of functionally related putative genes were defined, supporting a refined version of the modular theory of phage evolution.</description><identifier>ISSN: 0042-6822</identifier><identifier>EISSN: 1096-0341</identifier><identifier>DOI: 10.1016/j.virol.2004.10.028</identifier><identifier>PMID: 15629775</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Amino Acid Sequence ; Bacteriophage ; Bacteriophages - genetics ; Computational Biology ; Genes, Viral ; Genome sequence ; Genome, Viral ; Molecular Sequence Data ; Open Reading Frames ; Sequence analysis ; Sequence Analysis, DNA ; Streptomyces ; Streptomyces - genetics ; Streptomyces - virology ; Streptomyces venezuelae ; Viral Proteins - genetics ; Virus Integration ; VWB</subject><ispartof>Virology (New York, N.Y.), 2005-01, Vol.331 (2), p.325-337</ispartof><rights>2004 Elsevier Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c433t-bc82c08bf68506e55c367743f9dbc4b49fce985c4c99e4240add6df2e09821563</citedby><cites>FETCH-LOGICAL-c433t-bc82c08bf68506e55c367743f9dbc4b49fce985c4c99e4240add6df2e09821563</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,27906,27907</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15629775$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Van Dessel, W.</creatorcontrib><creatorcontrib>Van Mellaert, L.</creatorcontrib><creatorcontrib>Liesegang, H.</creatorcontrib><creatorcontrib>Raasch, C.</creatorcontrib><creatorcontrib>DeKeersmaeker, S.</creatorcontrib><creatorcontrib>Geukens, N.</creatorcontrib><creatorcontrib>Lammertyn, E.</creatorcontrib><creatorcontrib>Streit, W.</creatorcontrib><creatorcontrib>Anné, J.</creatorcontrib><title>Complete genomic nucleotide sequence and analysis of the temperate bacteriophage VWB</title><title>Virology (New York, N.Y.)</title><addtitle>Virology</addtitle><description>The entire double-stranded DNA genome of the Streptomyces venezuelae bacteriophage VWB was sequenced and analyzed. Its size is 49,220 bp with an overall molar G + C content of 71.2 mol%. Sixty-one potential open reading frames were identified and annotated using several complementary bioinformatics tools. Clusters of functionally related putative genes were defined, supporting a refined version of the modular theory of phage evolution.</description><subject>Amino Acid Sequence</subject><subject>Bacteriophage</subject><subject>Bacteriophages - genetics</subject><subject>Computational Biology</subject><subject>Genes, Viral</subject><subject>Genome sequence</subject><subject>Genome, Viral</subject><subject>Molecular Sequence Data</subject><subject>Open Reading Frames</subject><subject>Sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Streptomyces</subject><subject>Streptomyces - genetics</subject><subject>Streptomyces - virology</subject><subject>Streptomyces venezuelae</subject><subject>Viral Proteins - genetics</subject><subject>Virus Integration</subject><subject>VWB</subject><issn>0042-6822</issn><issn>1096-0341</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><recordid>eNqFkE9PwyAYh4nR6Jx-AhPTk7dOCpTCwYMu_ktMvEw9EgpvlaUtFbolfnuZW-JND4Tw8vzeFx6Ezgo8K3DBL5eztQu-nRGMWarMMBF7aFJgyXNMWbGPJumC5FwQcoSOY1zidK4qfIiOipITWVXlBC3mvhtaGCF7h953zmT9yrTgR2chi_C5gt5Apnublm6_oouZb7LxA7IRugGCTslamxGC88OHfofs9e3mBB00uo1wutun6OXudjF_yJ-e7x_n10-5YZSOeW0EMVjUDRcl5lCWhvKqYrSRtjasZrIxIEVpmJESGGFYW8ttQwBLQdIX6BRdbPsOwaeXxlF1LhpoW92DX0XFK0olE_hfsKhEKUpKE0i3oAk-xgCNGoLrdPhSBVYb62qpfqyrjfVNMVlPqfNd-1Xdgf3N7DQn4GoLQLKxdhBUNG5j1roAZlTWuz8HfANsPJTb</recordid><startdate>20050120</startdate><enddate>20050120</enddate><creator>Van Dessel, W.</creator><creator>Van Mellaert, L.</creator><creator>Liesegang, H.</creator><creator>Raasch, C.</creator><creator>DeKeersmaeker, S.</creator><creator>Geukens, N.</creator><creator>Lammertyn, E.</creator><creator>Streit, W.</creator><creator>Anné, J.</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U9</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20050120</creationdate><title>Complete genomic nucleotide sequence and analysis of the temperate bacteriophage VWB</title><author>Van Dessel, W. ; Van Mellaert, L. ; Liesegang, H. ; Raasch, C. ; DeKeersmaeker, S. ; Geukens, N. ; Lammertyn, E. ; Streit, W. ; Anné, J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c433t-bc82c08bf68506e55c367743f9dbc4b49fce985c4c99e4240add6df2e09821563</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Amino Acid Sequence</topic><topic>Bacteriophage</topic><topic>Bacteriophages - genetics</topic><topic>Computational Biology</topic><topic>Genes, Viral</topic><topic>Genome sequence</topic><topic>Genome, Viral</topic><topic>Molecular Sequence Data</topic><topic>Open Reading Frames</topic><topic>Sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>Streptomyces</topic><topic>Streptomyces - genetics</topic><topic>Streptomyces - virology</topic><topic>Streptomyces venezuelae</topic><topic>Viral Proteins - genetics</topic><topic>Virus Integration</topic><topic>VWB</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Van Dessel, W.</creatorcontrib><creatorcontrib>Van Mellaert, L.</creatorcontrib><creatorcontrib>Liesegang, H.</creatorcontrib><creatorcontrib>Raasch, C.</creatorcontrib><creatorcontrib>DeKeersmaeker, S.</creatorcontrib><creatorcontrib>Geukens, N.</creatorcontrib><creatorcontrib>Lammertyn, E.</creatorcontrib><creatorcontrib>Streit, W.</creatorcontrib><creatorcontrib>Anné, J.</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Virology (New York, N.Y.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Van Dessel, W.</au><au>Van Mellaert, L.</au><au>Liesegang, H.</au><au>Raasch, C.</au><au>DeKeersmaeker, S.</au><au>Geukens, N.</au><au>Lammertyn, E.</au><au>Streit, W.</au><au>Anné, J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genomic nucleotide sequence and analysis of the temperate bacteriophage VWB</atitle><jtitle>Virology (New York, N.Y.)</jtitle><addtitle>Virology</addtitle><date>2005-01-20</date><risdate>2005</risdate><volume>331</volume><issue>2</issue><spage>325</spage><epage>337</epage><pages>325-337</pages><issn>0042-6822</issn><eissn>1096-0341</eissn><abstract>The entire double-stranded DNA genome of the Streptomyces venezuelae bacteriophage VWB was sequenced and analyzed. Its size is 49,220 bp with an overall molar G + C content of 71.2 mol%. Sixty-one potential open reading frames were identified and annotated using several complementary bioinformatics tools. Clusters of functionally related putative genes were defined, supporting a refined version of the modular theory of phage evolution.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>15629775</pmid><doi>10.1016/j.virol.2004.10.028</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0042-6822
ispartof Virology (New York, N.Y.), 2005-01, Vol.331 (2), p.325-337
issn 0042-6822
1096-0341
language eng
recordid cdi_proquest_miscellaneous_67339480
source Elsevier:Jisc Collections:Elsevier Read and Publish Agreement 2022-2024:Freedom Collection (Reading list)
subjects Amino Acid Sequence
Bacteriophage
Bacteriophages - genetics
Computational Biology
Genes, Viral
Genome sequence
Genome, Viral
Molecular Sequence Data
Open Reading Frames
Sequence analysis
Sequence Analysis, DNA
Streptomyces
Streptomyces - genetics
Streptomyces - virology
Streptomyces venezuelae
Viral Proteins - genetics
Virus Integration
VWB
title Complete genomic nucleotide sequence and analysis of the temperate bacteriophage VWB
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-17T08%3A46%3A58IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Complete%20genomic%20nucleotide%20sequence%20and%20analysis%20of%20the%20temperate%20bacteriophage%20VWB&rft.jtitle=Virology%20(New%20York,%20N.Y.)&rft.au=Van%20Dessel,%20W.&rft.date=2005-01-20&rft.volume=331&rft.issue=2&rft.spage=325&rft.epage=337&rft.pages=325-337&rft.issn=0042-6822&rft.eissn=1096-0341&rft_id=info:doi/10.1016/j.virol.2004.10.028&rft_dat=%3Cproquest_cross%3E67339480%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c433t-bc82c08bf68506e55c367743f9dbc4b49fce985c4c99e4240add6df2e09821563%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=17858533&rft_id=info:pmid/15629775&rfr_iscdi=true