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nationwide molecular epidemiological study on hepatitis B virus in Indonesia: identification of two novel subgenotypes, B8 and C7
Upon phylogenetic analysis of a partial S gene sequence [396 nucleotides (nt)], 928 hepatitis B virus (HBV) strains obtained from 899 viremic subjects in 28 major cities on 15 islands of Indonesia in 1989-2007 segregated into four HBV genotypes. Genotype B was predominant (66%), followed by genotype...
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| Published in: | Archives of virology 2009-07, Vol.154 (7), p.1047-1059 |
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| container_end_page | 1059 |
| container_issue | 7 |
| container_start_page | 1047 |
| container_title | Archives of virology |
| container_volume | 154 |
| creator | Mulyanto Depamede, Sulaiman Ngongu Surayah, Kiely Tsuda, Fumio Ichiyama, Koji Takahashi, Masaharu Okamoto, Hiroaki |
| description | Upon phylogenetic analysis of a partial S gene sequence [396 nucleotides (nt)], 928 hepatitis B virus (HBV) strains obtained from 899 viremic subjects in 28 major cities on 15 islands of Indonesia in 1989-2007 segregated into four HBV genotypes. Genotype B was predominant (66%), followed by genotype C (26%), genotype D (7%), and genotype A (0.8%). Comparative and phylogenetic analyses of the 396-nt S gene sequence of 928 HBV isolates and whole genomic sequences of 25 selected HBV isolates revealed a total of 14 subgenotypes within genotypes A-D: two (A1 and A2) in genotype A (HBV/A), five (B2, B3, B5, B7, and a novel subgenotype, tentatively designated B8) in HBV/B, five (C1, C2, C5, C6, and another novel subgenotype, C7) in HBV/C, and two (D1 and D3) in HBV/D. The distribution of HBV genotypes/subgenotypes, including B8 and C7, seems to be associated with ethnological origins in Indonesia. |
| doi_str_mv | 10.1007/s00705-009-0406-9 |
| format | article |
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Genotype B was predominant (66%), followed by genotype C (26%), genotype D (7%), and genotype A (0.8%). Comparative and phylogenetic analyses of the 396-nt S gene sequence of 928 HBV isolates and whole genomic sequences of 25 selected HBV isolates revealed a total of 14 subgenotypes within genotypes A-D: two (A1 and A2) in genotype A (HBV/A), five (B2, B3, B5, B7, and a novel subgenotype, tentatively designated B8) in HBV/B, five (C1, C2, C5, C6, and another novel subgenotype, C7) in HBV/C, and two (D1 and D3) in HBV/D. The distribution of HBV genotypes/subgenotypes, including B8 and C7, seems to be associated with ethnological origins in Indonesia.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-009-0406-9</identifier><identifier>PMID: 19499283</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Antibodies, Viral - blood ; Bats ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Fundamental and applied biological sciences. Psychology ; Genomes ; Genotype ; Genotype & phenotype ; Geography ; Hepatitis B ; Hepatitis B - blood ; Hepatitis B - epidemiology ; Hepatitis B - genetics ; Hepatitis B - immunology ; Hepatitis B virus ; Hepatitis B virus - classification ; Hepatitis B virus - genetics ; Hepatitis D - epidemiology ; Hepatitis Delta Virus - genetics ; Hepatitis Delta Virus - isolation & purification ; Humans ; Indonesia - epidemiology ; Infections ; Infectious Diseases ; Islands ; Medical Microbiology ; Medicine ; Microbiology ; Minority & ethnic groups ; Miscellaneous ; Molecular Epidemiology - methods ; Molecular Sequence Data ; Original Article ; Pacific Islands - epidemiology ; Phylogenetics ; Phylogeny ; RNA, Viral - genetics ; Virology</subject><ispartof>Archives of virology, 2009-07, Vol.154 (7), p.1047-1059</ispartof><rights>Springer-Verlag 2009</rights><rights>2009 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c520t-42b3e8b7e35b155c10bade2d0163b35b923b44ca783f93c1f877ff454221842c3</citedby><cites>FETCH-LOGICAL-c520t-42b3e8b7e35b155c10bade2d0163b35b923b44ca783f93c1f877ff454221842c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21766161$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19499283$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mulyanto</creatorcontrib><creatorcontrib>Depamede, Sulaiman Ngongu</creatorcontrib><creatorcontrib>Surayah, Kiely</creatorcontrib><creatorcontrib>Tsuda, Fumio</creatorcontrib><creatorcontrib>Ichiyama, Koji</creatorcontrib><creatorcontrib>Takahashi, Masaharu</creatorcontrib><creatorcontrib>Okamoto, Hiroaki</creatorcontrib><title>nationwide molecular epidemiological study on hepatitis B virus in Indonesia: identification of two novel subgenotypes, B8 and C7</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Upon phylogenetic analysis of a partial S gene sequence [396 nucleotides (nt)], 928 hepatitis B virus (HBV) strains obtained from 899 viremic subjects in 28 major cities on 15 islands of Indonesia in 1989-2007 segregated into four HBV genotypes. Genotype B was predominant (66%), followed by genotype C (26%), genotype D (7%), and genotype A (0.8%). Comparative and phylogenetic analyses of the 396-nt S gene sequence of 928 HBV isolates and whole genomic sequences of 25 selected HBV isolates revealed a total of 14 subgenotypes within genotypes A-D: two (A1 and A2) in genotype A (HBV/A), five (B2, B3, B5, B7, and a novel subgenotype, tentatively designated B8) in HBV/B, five (C1, C2, C5, C6, and another novel subgenotype, C7) in HBV/C, and two (D1 and D3) in HBV/D. The distribution of HBV genotypes/subgenotypes, including B8 and C7, seems to be associated with ethnological origins in Indonesia.</description><subject>Antibodies, Viral - blood</subject><subject>Bats</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genomes</subject><subject>Genotype</subject><subject>Genotype & phenotype</subject><subject>Geography</subject><subject>Hepatitis B</subject><subject>Hepatitis B - blood</subject><subject>Hepatitis B - epidemiology</subject><subject>Hepatitis B - genetics</subject><subject>Hepatitis B - immunology</subject><subject>Hepatitis B virus</subject><subject>Hepatitis B virus - classification</subject><subject>Hepatitis B virus - genetics</subject><subject>Hepatitis D - epidemiology</subject><subject>Hepatitis Delta Virus - genetics</subject><subject>Hepatitis Delta Virus - isolation & purification</subject><subject>Humans</subject><subject>Indonesia - epidemiology</subject><subject>Infections</subject><subject>Infectious Diseases</subject><subject>Islands</subject><subject>Medical Microbiology</subject><subject>Medicine</subject><subject>Microbiology</subject><subject>Minority & ethnic groups</subject><subject>Miscellaneous</subject><subject>Molecular Epidemiology - methods</subject><subject>Molecular Sequence Data</subject><subject>Original Article</subject><subject>Pacific Islands - epidemiology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>RNA, Viral - genetics</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNqFkU1vFSEUhonR2NvqD3CjxERXjh4-Zga6szd-NGniQrsmDANXmhm4wkybu_Sfl8nc2MSFhgTC4XlfDrwIvSDwngC0H3KZoK4AZAUcmko-QhvCGa1EK8VjtAEGvBINiBN0mvMNQCmw-ik6IZJLSQXboN9BTz6GO99bPMbBmnnQCdt92Y8-DnHnjR5wnub-gGPAP-2-8JPP-ALf-jRn7AO-DH0MNnt9jossTN4V0eKKo8PTXcQh3tpiMnc7G-J02Nv8Dl8IrEOPt-0z9MTpIdvnx_UMXX_-9GP7tbr69uVy-_GqMjWFqeK0Y1Z0rWV1R-raEOh0b2kPpGFdqUnKOs6NbgVzkhniRNs6x2tOKRGcGnaG3q6--xR_zTZPavTZ2GHQwcY5q6blNaMC_gtSWAYnBXz9F3gT5xTKIxQllEnZyMWNrJBJMedkndonP-p0UATUkqJaU1QlRbWkqGTRvDwaz91o-wfFMbYCvDkCOpd8XNLB-PyHo6RtGtIsHdKVy-Uo7Gx66PBft79aRU5HpXepGF9_p0BY-eqalQ9l93lXvZY</recordid><startdate>20090701</startdate><enddate>20090701</enddate><creator>Mulyanto</creator><creator>Depamede, Sulaiman Ngongu</creator><creator>Surayah, Kiely</creator><creator>Tsuda, Fumio</creator><creator>Ichiyama, Koji</creator><creator>Takahashi, Masaharu</creator><creator>Okamoto, Hiroaki</creator><general>Vienna : Springer Vienna</general><general>Springer Vienna</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20090701</creationdate><title>nationwide molecular epidemiological study on hepatitis B virus in Indonesia: identification of two novel subgenotypes, B8 and C7</title><author>Mulyanto ; Depamede, Sulaiman Ngongu ; Surayah, Kiely ; Tsuda, Fumio ; Ichiyama, Koji ; Takahashi, Masaharu ; Okamoto, Hiroaki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c520t-42b3e8b7e35b155c10bade2d0163b35b923b44ca783f93c1f877ff454221842c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Antibodies, Viral - blood</topic><topic>Bats</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Fundamental and applied biological sciences. 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Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mulyanto</au><au>Depamede, Sulaiman Ngongu</au><au>Surayah, Kiely</au><au>Tsuda, Fumio</au><au>Ichiyama, Koji</au><au>Takahashi, Masaharu</au><au>Okamoto, Hiroaki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>nationwide molecular epidemiological study on hepatitis B virus in Indonesia: identification of two novel subgenotypes, B8 and C7</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2009-07-01</date><risdate>2009</risdate><volume>154</volume><issue>7</issue><spage>1047</spage><epage>1059</epage><pages>1047-1059</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Upon phylogenetic analysis of a partial S gene sequence [396 nucleotides (nt)], 928 hepatitis B virus (HBV) strains obtained from 899 viremic subjects in 28 major cities on 15 islands of Indonesia in 1989-2007 segregated into four HBV genotypes. Genotype B was predominant (66%), followed by genotype C (26%), genotype D (7%), and genotype A (0.8%). Comparative and phylogenetic analyses of the 396-nt S gene sequence of 928 HBV isolates and whole genomic sequences of 25 selected HBV isolates revealed a total of 14 subgenotypes within genotypes A-D: two (A1 and A2) in genotype A (HBV/A), five (B2, B3, B5, B7, and a novel subgenotype, tentatively designated B8) in HBV/B, five (C1, C2, C5, C6, and another novel subgenotype, C7) in HBV/C, and two (D1 and D3) in HBV/D. The distribution of HBV genotypes/subgenotypes, including B8 and C7, seems to be associated with ethnological origins in Indonesia.</abstract><cop>Vienna</cop><pub>Vienna : Springer Vienna</pub><pmid>19499283</pmid><doi>10.1007/s00705-009-0406-9</doi><tpages>13</tpages></addata></record> |
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| subjects | Antibodies, Viral - blood Bats Biological and medical sciences Biomedical and Life Sciences Biomedicine Fundamental and applied biological sciences. Psychology Genomes Genotype Genotype & phenotype Geography Hepatitis B Hepatitis B - blood Hepatitis B - epidemiology Hepatitis B - genetics Hepatitis B - immunology Hepatitis B virus Hepatitis B virus - classification Hepatitis B virus - genetics Hepatitis D - epidemiology Hepatitis Delta Virus - genetics Hepatitis Delta Virus - isolation & purification Humans Indonesia - epidemiology Infections Infectious Diseases Islands Medical Microbiology Medicine Microbiology Minority & ethnic groups Miscellaneous Molecular Epidemiology - methods Molecular Sequence Data Original Article Pacific Islands - epidemiology Phylogenetics Phylogeny RNA, Viral - genetics Virology |
| title | nationwide molecular epidemiological study on hepatitis B virus in Indonesia: identification of two novel subgenotypes, B8 and C7 |
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