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Cloning and Characterization of a Second form of the Rice Adenine Phosphoribosyl Transferase Gene (OsAPT2) and its Association with TGMS
A rice gene, OsAPT2, which encodes a putative adenine phosphoribosyl transferase (APRT), was cloned and characterized. Analysis of the cDNA and genomic sequences revealed seven exons and six introns in the OsAPT2. The deduced amino acid sequence of OsAPT2 is highly homologous to those of previously...
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Published in: | Plant molecular biology 2006-02, Vol.60 (3), p.365-376 |
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description | A rice gene, OsAPT2, which encodes a putative adenine phosphoribosyl transferase (APRT), was cloned and characterized. Analysis of the cDNA and genomic sequences revealed seven exons and six introns in the OsAPT2. The deduced amino acid sequence of OsAPT2 is highly homologous to those of previously isolated APRTs. RT-PCR analysis indicated that the OsAPT2 transcript in the young panicles of 'Annong S-1' is down-regulated at 29 degrees C, the critical temperature for induction of 'Annong S-1' fertility conversion. Since the panicle is likely the thermo-sensitive organ at the early stages of pollen fertility alternation, the observed heat-induced change in the OsAPT2 expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility (TGMS) in 'Annong S-1'. An antisense strategy was used to suppress the expression of the OsAPT2 homolog in Arabidopsis, and the obtained homozygous transgenic plants contained lower AMP content, displayed lower pollen germination rates and exhibited some abnormalities in leaf phenotypes and flowering timing. These data suggest that OsAPT2 is likely to be involved in TGMS in the rice line 'Annong S-1'. |
doi_str_mv | 10.1007/s11103-005-4208-5 |
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Analysis of the cDNA and genomic sequences revealed seven exons and six introns in the OsAPT2. The deduced amino acid sequence of OsAPT2 is highly homologous to those of previously isolated APRTs. RT-PCR analysis indicated that the OsAPT2 transcript in the young panicles of 'Annong S-1' is down-regulated at 29 degrees C, the critical temperature for induction of 'Annong S-1' fertility conversion. Since the panicle is likely the thermo-sensitive organ at the early stages of pollen fertility alternation, the observed heat-induced change in the OsAPT2 expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility (TGMS) in 'Annong S-1'. An antisense strategy was used to suppress the expression of the OsAPT2 homolog in Arabidopsis, and the obtained homozygous transgenic plants contained lower AMP content, displayed lower pollen germination rates and exhibited some abnormalities in leaf phenotypes and flowering timing. These data suggest that OsAPT2 is likely to be involved in TGMS in the rice line 'Annong S-1'.</description><identifier>ISSN: 0167-4412</identifier><identifier>EISSN: 1573-5028</identifier><identifier>DOI: 10.1007/s11103-005-4208-5</identifier><identifier>PMID: 16514560</identifier><language>eng</language><publisher>Netherlands: Springer Nature B.V</publisher><subject>Adenine - chemistry ; adenine phosphoribosyltransferase ; Adenine Phosphoribosyltransferase - chemistry ; Adenine Phosphoribosyltransferase - genetics ; Adenosine - chemistry ; Adenosine Monophosphate - metabolism ; Alleles ; Amino Acid Sequence ; amino acid sequences ; Amino acids ; Blotting, Northern ; Cloning ; Cloning, Molecular ; complementary DNA ; Computational Biology - methods ; DNA Primers - chemistry ; DNA, Complementary - metabolism ; Down-Regulation ; Enzymes ; Exons ; Fertility ; gene expression regulation ; Gene Expression Regulation, Plant ; genes ; Genes, Plant ; Genetic Vectors ; Genomics ; Homozygote ; Hot Temperature ; inflorescences ; Introns ; Light ; Male sterility ; messenger RNA ; Models, Genetic ; Molecular Sequence Data ; nucleotide sequences ; Nucleotides - chemistry ; Oligonucleotides, Antisense - chemistry ; Oryza - enzymology ; Oryza - genetics ; Oryza sativa ; Phenotype ; plant fertility ; Plant Leaves - metabolism ; Plant Physiological Phenomena ; Pollen ; Pollen - metabolism ; pollen fertility ; pollen germination ; Polymerase Chain Reaction ; Protein Structure, Secondary ; Reverse Transcriptase Polymerase Chain Reaction ; Rice ; RNA, Messenger - metabolism ; Sequence Homology, Amino Acid ; Temperature ; thermo-sensitive gene male sterility ; Transgenes ; Transgenic plants</subject><ispartof>Plant molecular biology, 2006-02, Vol.60 (3), p.365-376</ispartof><rights>Springer 2006</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c381t-182a848b70535ea7d8211bf81007abf1549f061f299f190e119a16d261ebc4c23</citedby><cites>FETCH-LOGICAL-c381t-182a848b70535ea7d8211bf81007abf1549f061f299f190e119a16d261ebc4c23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16514560$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhou, C.J</creatorcontrib><creatorcontrib>Li, J</creatorcontrib><creatorcontrib>Zou, J.C</creatorcontrib><creatorcontrib>Liang, F.S</creatorcontrib><creatorcontrib>Ye, C.J</creatorcontrib><creatorcontrib>Jin, D.M</creatorcontrib><creatorcontrib>Weng, M.L</creatorcontrib><creatorcontrib>Wang, B</creatorcontrib><title>Cloning and Characterization of a Second form of the Rice Adenine Phosphoribosyl Transferase Gene (OsAPT2) and its Association with TGMS</title><title>Plant molecular biology</title><addtitle>Plant Mol Biol</addtitle><description>A rice gene, OsAPT2, which encodes a putative adenine phosphoribosyl transferase (APRT), was cloned and characterized. Analysis of the cDNA and genomic sequences revealed seven exons and six introns in the OsAPT2. The deduced amino acid sequence of OsAPT2 is highly homologous to those of previously isolated APRTs. RT-PCR analysis indicated that the OsAPT2 transcript in the young panicles of 'Annong S-1' is down-regulated at 29 degrees C, the critical temperature for induction of 'Annong S-1' fertility conversion. Since the panicle is likely the thermo-sensitive organ at the early stages of pollen fertility alternation, the observed heat-induced change in the OsAPT2 expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility (TGMS) in 'Annong S-1'. An antisense strategy was used to suppress the expression of the OsAPT2 homolog in Arabidopsis, and the obtained homozygous transgenic plants contained lower AMP content, displayed lower pollen germination rates and exhibited some abnormalities in leaf phenotypes and flowering timing. These data suggest that OsAPT2 is likely to be involved in TGMS in the rice line 'Annong S-1'.</description><subject>Adenine - chemistry</subject><subject>adenine phosphoribosyltransferase</subject><subject>Adenine Phosphoribosyltransferase - chemistry</subject><subject>Adenine Phosphoribosyltransferase - genetics</subject><subject>Adenosine - chemistry</subject><subject>Adenosine Monophosphate - metabolism</subject><subject>Alleles</subject><subject>Amino Acid Sequence</subject><subject>amino acid sequences</subject><subject>Amino acids</subject><subject>Blotting, Northern</subject><subject>Cloning</subject><subject>Cloning, Molecular</subject><subject>complementary DNA</subject><subject>Computational Biology - methods</subject><subject>DNA Primers - chemistry</subject><subject>DNA, Complementary - metabolism</subject><subject>Down-Regulation</subject><subject>Enzymes</subject><subject>Exons</subject><subject>Fertility</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Plant</subject><subject>genes</subject><subject>Genes, Plant</subject><subject>Genetic Vectors</subject><subject>Genomics</subject><subject>Homozygote</subject><subject>Hot Temperature</subject><subject>inflorescences</subject><subject>Introns</subject><subject>Light</subject><subject>Male sterility</subject><subject>messenger RNA</subject><subject>Models, Genetic</subject><subject>Molecular Sequence Data</subject><subject>nucleotide sequences</subject><subject>Nucleotides - chemistry</subject><subject>Oligonucleotides, Antisense - chemistry</subject><subject>Oryza - enzymology</subject><subject>Oryza - genetics</subject><subject>Oryza sativa</subject><subject>Phenotype</subject><subject>plant fertility</subject><subject>Plant Leaves - metabolism</subject><subject>Plant Physiological Phenomena</subject><subject>Pollen</subject><subject>Pollen - metabolism</subject><subject>pollen fertility</subject><subject>pollen germination</subject><subject>Polymerase Chain Reaction</subject><subject>Protein Structure, Secondary</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>Rice</subject><subject>RNA, Messenger - metabolism</subject><subject>Sequence Homology, Amino Acid</subject><subject>Temperature</subject><subject>thermo-sensitive gene male sterility</subject><subject>Transgenes</subject><subject>Transgenic plants</subject><issn>0167-4412</issn><issn>1573-5028</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><recordid>eNqFkcFu1DAQhi0EotvCA3ABiwOCQ2DGsR3nuFrBglTUit2eLSexG1e78dbOCpUn6GPjkJWQuHAaaeb7_xn7J-QVwkcEqD4lRISyABAFZ6AK8YQsUFRlIYCpp2QBKKuCc2Rn5DylO4CsKuVzcoZSIBcSFuRxtQuDH26pGTq66k007Wij_2VGHwYaHDV0Y9uQhy7E_dQYe0t_-NbSZWez0tLrPqRDH6JvQnrY0W00Q3I2mmTp2ub5-6u0vN6yD39W-DHRZUqh9fOGn37s6Xb9ffOCPHNml-zLU70gN18-b1dfi8ur9bfV8rJoS4VjgYoZxVVTgSiFNVWnGGLj1PQfpnEoeO1AomN17bAGi1gblB2TaJuWt6y8IO9m30MM90ebRr33qbW7nRlsOCYtqwrLulL_BbFmCiSbHN_-A96FYxzyI3QlJeOCC8gQzlAbQ0rROn2Ifm_ig0bQ0_F6DlPnMPUUphZZ8_pkfGz2tvurOKWXgTcz4EzQ5jb6pG82DLDMQUvOpCh_AzSNoVo</recordid><startdate>20060201</startdate><enddate>20060201</enddate><creator>Zhou, C.J</creator><creator>Li, J</creator><creator>Zou, J.C</creator><creator>Liang, F.S</creator><creator>Ye, C.J</creator><creator>Jin, D.M</creator><creator>Weng, M.L</creator><creator>Wang, B</creator><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20060201</creationdate><title>Cloning and Characterization of a Second form of the Rice Adenine Phosphoribosyl Transferase Gene (OsAPT2) and its Association with TGMS</title><author>Zhou, C.J ; Li, J ; Zou, J.C ; Liang, F.S ; Ye, C.J ; Jin, D.M ; Weng, M.L ; Wang, B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c381t-182a848b70535ea7d8211bf81007abf1549f061f299f190e119a16d261ebc4c23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Adenine - chemistry</topic><topic>adenine phosphoribosyltransferase</topic><topic>Adenine Phosphoribosyltransferase - chemistry</topic><topic>Adenine Phosphoribosyltransferase - genetics</topic><topic>Adenosine - chemistry</topic><topic>Adenosine Monophosphate - metabolism</topic><topic>Alleles</topic><topic>Amino Acid Sequence</topic><topic>amino acid sequences</topic><topic>Amino acids</topic><topic>Blotting, Northern</topic><topic>Cloning</topic><topic>Cloning, Molecular</topic><topic>complementary DNA</topic><topic>Computational Biology - methods</topic><topic>DNA Primers - chemistry</topic><topic>DNA, Complementary - metabolism</topic><topic>Down-Regulation</topic><topic>Enzymes</topic><topic>Exons</topic><topic>Fertility</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Plant</topic><topic>genes</topic><topic>Genes, Plant</topic><topic>Genetic Vectors</topic><topic>Genomics</topic><topic>Homozygote</topic><topic>Hot Temperature</topic><topic>inflorescences</topic><topic>Introns</topic><topic>Light</topic><topic>Male sterility</topic><topic>messenger RNA</topic><topic>Models, Genetic</topic><topic>Molecular Sequence Data</topic><topic>nucleotide sequences</topic><topic>Nucleotides - chemistry</topic><topic>Oligonucleotides, Antisense - chemistry</topic><topic>Oryza - enzymology</topic><topic>Oryza - genetics</topic><topic>Oryza sativa</topic><topic>Phenotype</topic><topic>plant fertility</topic><topic>Plant Leaves - metabolism</topic><topic>Plant Physiological Phenomena</topic><topic>Pollen</topic><topic>Pollen - metabolism</topic><topic>pollen fertility</topic><topic>pollen germination</topic><topic>Polymerase Chain Reaction</topic><topic>Protein Structure, Secondary</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>Rice</topic><topic>RNA, Messenger - metabolism</topic><topic>Sequence Homology, Amino Acid</topic><topic>Temperature</topic><topic>thermo-sensitive gene male sterility</topic><topic>Transgenes</topic><topic>Transgenic plants</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhou, C.J</creatorcontrib><creatorcontrib>Li, J</creatorcontrib><creatorcontrib>Zou, J.C</creatorcontrib><creatorcontrib>Liang, F.S</creatorcontrib><creatorcontrib>Ye, C.J</creatorcontrib><creatorcontrib>Jin, D.M</creatorcontrib><creatorcontrib>Weng, M.L</creatorcontrib><creatorcontrib>Wang, B</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>ProQuest_Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep (ProQuest)</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>ProQuest research library</collection><collection>ProQuest Biological Science Journals</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Plant molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhou, C.J</au><au>Li, J</au><au>Zou, J.C</au><au>Liang, F.S</au><au>Ye, C.J</au><au>Jin, D.M</au><au>Weng, M.L</au><au>Wang, B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cloning and Characterization of a Second form of the Rice Adenine Phosphoribosyl Transferase Gene (OsAPT2) and its Association with TGMS</atitle><jtitle>Plant molecular biology</jtitle><addtitle>Plant Mol Biol</addtitle><date>2006-02-01</date><risdate>2006</risdate><volume>60</volume><issue>3</issue><spage>365</spage><epage>376</epage><pages>365-376</pages><issn>0167-4412</issn><eissn>1573-5028</eissn><abstract>A rice gene, OsAPT2, which encodes a putative adenine phosphoribosyl transferase (APRT), was cloned and characterized. Analysis of the cDNA and genomic sequences revealed seven exons and six introns in the OsAPT2. The deduced amino acid sequence of OsAPT2 is highly homologous to those of previously isolated APRTs. RT-PCR analysis indicated that the OsAPT2 transcript in the young panicles of 'Annong S-1' is down-regulated at 29 degrees C, the critical temperature for induction of 'Annong S-1' fertility conversion. Since the panicle is likely the thermo-sensitive organ at the early stages of pollen fertility alternation, the observed heat-induced change in the OsAPT2 expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility (TGMS) in 'Annong S-1'. An antisense strategy was used to suppress the expression of the OsAPT2 homolog in Arabidopsis, and the obtained homozygous transgenic plants contained lower AMP content, displayed lower pollen germination rates and exhibited some abnormalities in leaf phenotypes and flowering timing. These data suggest that OsAPT2 is likely to be involved in TGMS in the rice line 'Annong S-1'.</abstract><cop>Netherlands</cop><pub>Springer Nature B.V</pub><pmid>16514560</pmid><doi>10.1007/s11103-005-4208-5</doi><tpages>12</tpages></addata></record> |
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subjects | Adenine - chemistry adenine phosphoribosyltransferase Adenine Phosphoribosyltransferase - chemistry Adenine Phosphoribosyltransferase - genetics Adenosine - chemistry Adenosine Monophosphate - metabolism Alleles Amino Acid Sequence amino acid sequences Amino acids Blotting, Northern Cloning Cloning, Molecular complementary DNA Computational Biology - methods DNA Primers - chemistry DNA, Complementary - metabolism Down-Regulation Enzymes Exons Fertility gene expression regulation Gene Expression Regulation, Plant genes Genes, Plant Genetic Vectors Genomics Homozygote Hot Temperature inflorescences Introns Light Male sterility messenger RNA Models, Genetic Molecular Sequence Data nucleotide sequences Nucleotides - chemistry Oligonucleotides, Antisense - chemistry Oryza - enzymology Oryza - genetics Oryza sativa Phenotype plant fertility Plant Leaves - metabolism Plant Physiological Phenomena Pollen Pollen - metabolism pollen fertility pollen germination Polymerase Chain Reaction Protein Structure, Secondary Reverse Transcriptase Polymerase Chain Reaction Rice RNA, Messenger - metabolism Sequence Homology, Amino Acid Temperature thermo-sensitive gene male sterility Transgenes Transgenic plants |
title | Cloning and Characterization of a Second form of the Rice Adenine Phosphoribosyl Transferase Gene (OsAPT2) and its Association with TGMS |
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