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The X-ray Structure of the Type II Secretion System Complex Formed by the N-terminal Domain of EpsE and the Cytoplasmic Domain of EpsL of Vibrio cholerae
Gram-negative bacteria use type II secretion systems for the transport of virulence factors and hydrolytic enzymes through the outer membrane. These sophisticated multi-protein complexes reach from the pore in the outer membrane via the pseudopilins in the periplasm and a multi-protein inner-membran...
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Published in: | Journal of molecular biology 2005-05, Vol.348 (4), p.845-855 |
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description | Gram-negative bacteria use type II secretion systems for the transport of virulence factors and hydrolytic enzymes through the outer membrane. These sophisticated multi-protein complexes reach from the pore in the outer membrane
via the pseudopilins in the periplasm and a multi-protein inner-membrane sub-complex, to an ATPase in the cytoplasm. The human pathogen
Vibrio cholerae uses such a secretion machinery, called the Eps-system, for the export of its major virulence factor cholera toxin into the intestinal tract of the human host.
Here, we describe the 2.4
Å structure of the hetero-tetrameric complex of the N-terminal domain of the ATPase EpsE and the cytoplasmic domain of the inner membrane protein EpsL, which constitute the major cytoplasmic components of the Eps-system. A stable fragment of EpsE in complex with the cytoplasmic domain of EpsL was identified
via limited proteolysis and facilitated the crystallization of the complex.
This first structure of a complex between two different proteins of the type II secretion system reveals that the N-terminal domain of EpsE and the cytoplasmic domain of EpsL form a hetero-tetramer, in which EpsL is the central dimer and EpsE binds on the periphery. The dimer of EpsL in this complex is very similar to the dimer seen in the crystal structure of the native cytoplasmic domain of EpsL, suggesting a possible physiological relevance despite a relatively small 675
Å
2 buried solvent accessible surface. The N-terminal domain of EpsE, which forms a compact domain with an α+β-fold, places its helix α2 in a mostly hydrophobic cleft between domains II and III of EpsL burying 1700
Å
2 solvent accessible surface. This extensive interface involves several residues whose hydrophobic or charged nature is well conserved and is therefore likely to be of general importance in type II secretion systems. |
doi_str_mv | 10.1016/j.jmb.2005.02.061 |
format | article |
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via the pseudopilins in the periplasm and a multi-protein inner-membrane sub-complex, to an ATPase in the cytoplasm. The human pathogen
Vibrio cholerae uses such a secretion machinery, called the Eps-system, for the export of its major virulence factor cholera toxin into the intestinal tract of the human host.
Here, we describe the 2.4
Å structure of the hetero-tetrameric complex of the N-terminal domain of the ATPase EpsE and the cytoplasmic domain of the inner membrane protein EpsL, which constitute the major cytoplasmic components of the Eps-system. A stable fragment of EpsE in complex with the cytoplasmic domain of EpsL was identified
via limited proteolysis and facilitated the crystallization of the complex.
This first structure of a complex between two different proteins of the type II secretion system reveals that the N-terminal domain of EpsE and the cytoplasmic domain of EpsL form a hetero-tetramer, in which EpsL is the central dimer and EpsE binds on the periphery. The dimer of EpsL in this complex is very similar to the dimer seen in the crystal structure of the native cytoplasmic domain of EpsL, suggesting a possible physiological relevance despite a relatively small 675
Å
2 buried solvent accessible surface. The N-terminal domain of EpsE, which forms a compact domain with an α+β-fold, places its helix α2 in a mostly hydrophobic cleft between domains II and III of EpsL burying 1700
Å
2 solvent accessible surface. This extensive interface involves several residues whose hydrophobic or charged nature is well conserved and is therefore likely to be of general importance in type II secretion systems.</description><identifier>ISSN: 0022-2836</identifier><identifier>EISSN: 1089-8638</identifier><identifier>DOI: 10.1016/j.jmb.2005.02.061</identifier><identifier>PMID: 15843017</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Amino Acid Sequence ; Bacterial Proteins - chemistry ; Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Binding Sites ; cholera toxin ; Crystallography, X-Ray ; EpsE ; EpsL ; Membrane Proteins - chemistry ; Membrane Proteins - genetics ; Membrane Proteins - metabolism ; Models, Molecular ; Molecular Sequence Data ; Protein Binding ; Protein Structure, Quaternary ; Protein Structure, Tertiary ; Sequence Alignment ; type II secretion ; Vibrio cholerae ; Vibrio cholerae - chemistry ; Vibrio cholerae - genetics ; Vibrio cholerae - metabolism</subject><ispartof>Journal of molecular biology, 2005-05, Vol.348 (4), p.845-855</ispartof><rights>2005 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c479t-ff38f8f8d93bd03ef5a186aa00f83751f04bdc290005972f1f1d3a61bc1959723</citedby><cites>FETCH-LOGICAL-c479t-ff38f8f8d93bd03ef5a186aa00f83751f04bdc290005972f1f1d3a61bc1959723</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15843017$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Abendroth, Jan</creatorcontrib><creatorcontrib>Murphy, Paul</creatorcontrib><creatorcontrib>Sandkvist, Maria</creatorcontrib><creatorcontrib>Bagdasarian, Michael</creatorcontrib><creatorcontrib>Hol, Wim G.J.</creatorcontrib><title>The X-ray Structure of the Type II Secretion System Complex Formed by the N-terminal Domain of EpsE and the Cytoplasmic Domain of EpsL of Vibrio cholerae</title><title>Journal of molecular biology</title><addtitle>J Mol Biol</addtitle><description>Gram-negative bacteria use type II secretion systems for the transport of virulence factors and hydrolytic enzymes through the outer membrane. These sophisticated multi-protein complexes reach from the pore in the outer membrane
via the pseudopilins in the periplasm and a multi-protein inner-membrane sub-complex, to an ATPase in the cytoplasm. The human pathogen
Vibrio cholerae uses such a secretion machinery, called the Eps-system, for the export of its major virulence factor cholera toxin into the intestinal tract of the human host.
Here, we describe the 2.4
Å structure of the hetero-tetrameric complex of the N-terminal domain of the ATPase EpsE and the cytoplasmic domain of the inner membrane protein EpsL, which constitute the major cytoplasmic components of the Eps-system. A stable fragment of EpsE in complex with the cytoplasmic domain of EpsL was identified
via limited proteolysis and facilitated the crystallization of the complex.
This first structure of a complex between two different proteins of the type II secretion system reveals that the N-terminal domain of EpsE and the cytoplasmic domain of EpsL form a hetero-tetramer, in which EpsL is the central dimer and EpsE binds on the periphery. The dimer of EpsL in this complex is very similar to the dimer seen in the crystal structure of the native cytoplasmic domain of EpsL, suggesting a possible physiological relevance despite a relatively small 675
Å
2 buried solvent accessible surface. The N-terminal domain of EpsE, which forms a compact domain with an α+β-fold, places its helix α2 in a mostly hydrophobic cleft between domains II and III of EpsL burying 1700
Å
2 solvent accessible surface. This extensive interface involves several residues whose hydrophobic or charged nature is well conserved and is therefore likely to be of general importance in type II secretion systems.</description><subject>Amino Acid Sequence</subject><subject>Bacterial Proteins - chemistry</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Binding Sites</subject><subject>cholera toxin</subject><subject>Crystallography, X-Ray</subject><subject>EpsE</subject><subject>EpsL</subject><subject>Membrane Proteins - chemistry</subject><subject>Membrane Proteins - genetics</subject><subject>Membrane Proteins - metabolism</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Protein Binding</subject><subject>Protein Structure, Quaternary</subject><subject>Protein Structure, Tertiary</subject><subject>Sequence Alignment</subject><subject>type II secretion</subject><subject>Vibrio cholerae</subject><subject>Vibrio cholerae - chemistry</subject><subject>Vibrio cholerae - genetics</subject><subject>Vibrio cholerae - metabolism</subject><issn>0022-2836</issn><issn>1089-8638</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><recordid>eNqFkc-O0zAQhyMEYrsLD8AF-cQtwX-a2BEn1O0ulSo4tCBuluOMta6SONgOIo_C2-JsKyEurOYw0uibnzTzZdkbgguCSfX-VJz6pqAYlwWmBa7Is2xFsKhzUTHxPFthTGlOBauususQTjiBbC1eZlekFGuGCV9lv48PgL7nXs3oEP2k4-QBOYNiGh_nEdBuhw6gPUTrBnSYQ4QebVw_dvAL3TnfQ4ua-RH_nEfwvR1Uh25dr-yw5GzHsEVqaB-JzRzd2KnQW_0vsl_6N9t465B-cB14Ba-yF0Z1AV5f-k329W573HzK91_ud5uP-1yveR1zY5gwqdqaNS1mYEpFRKUUxkYwXhKD102rab0cX3NqiCEtUxVpNKmXAbvJ3p1zR-9-TBCi7G3Q0HVqADcFWXFe8ZqXT4Ipj9YlF0-DvMSMMpJAcga1dyF4MHL0tld-lgTLxbA8yWRYLoYlpjIZTjtvL-FTk57_d-OiNAEfzgCkp_204GXQFgYNrfWgo2yd_U_8Hzw3tfs</recordid><startdate>20050513</startdate><enddate>20050513</enddate><creator>Abendroth, Jan</creator><creator>Murphy, Paul</creator><creator>Sandkvist, Maria</creator><creator>Bagdasarian, Michael</creator><creator>Hol, Wim G.J.</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>H97</scope><scope>L.G</scope><scope>7X8</scope></search><sort><creationdate>20050513</creationdate><title>The X-ray Structure of the Type II Secretion System Complex Formed by the N-terminal Domain of EpsE and the Cytoplasmic Domain of EpsL of Vibrio cholerae</title><author>Abendroth, Jan ; Murphy, Paul ; Sandkvist, Maria ; Bagdasarian, Michael ; Hol, Wim G.J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c479t-ff38f8f8d93bd03ef5a186aa00f83751f04bdc290005972f1f1d3a61bc1959723</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Amino Acid Sequence</topic><topic>Bacterial Proteins - chemistry</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - metabolism</topic><topic>Binding Sites</topic><topic>cholera toxin</topic><topic>Crystallography, X-Ray</topic><topic>EpsE</topic><topic>EpsL</topic><topic>Membrane Proteins - chemistry</topic><topic>Membrane Proteins - genetics</topic><topic>Membrane Proteins - metabolism</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>Protein Binding</topic><topic>Protein Structure, Quaternary</topic><topic>Protein Structure, Tertiary</topic><topic>Sequence Alignment</topic><topic>type II secretion</topic><topic>Vibrio cholerae</topic><topic>Vibrio cholerae - chemistry</topic><topic>Vibrio cholerae - genetics</topic><topic>Vibrio cholerae - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Abendroth, Jan</creatorcontrib><creatorcontrib>Murphy, Paul</creatorcontrib><creatorcontrib>Sandkvist, Maria</creatorcontrib><creatorcontrib>Bagdasarian, Michael</creatorcontrib><creatorcontrib>Hol, Wim G.J.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Abendroth, Jan</au><au>Murphy, Paul</au><au>Sandkvist, Maria</au><au>Bagdasarian, Michael</au><au>Hol, Wim G.J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The X-ray Structure of the Type II Secretion System Complex Formed by the N-terminal Domain of EpsE and the Cytoplasmic Domain of EpsL of Vibrio cholerae</atitle><jtitle>Journal of molecular biology</jtitle><addtitle>J Mol Biol</addtitle><date>2005-05-13</date><risdate>2005</risdate><volume>348</volume><issue>4</issue><spage>845</spage><epage>855</epage><pages>845-855</pages><issn>0022-2836</issn><eissn>1089-8638</eissn><abstract>Gram-negative bacteria use type II secretion systems for the transport of virulence factors and hydrolytic enzymes through the outer membrane. These sophisticated multi-protein complexes reach from the pore in the outer membrane
via the pseudopilins in the periplasm and a multi-protein inner-membrane sub-complex, to an ATPase in the cytoplasm. The human pathogen
Vibrio cholerae uses such a secretion machinery, called the Eps-system, for the export of its major virulence factor cholera toxin into the intestinal tract of the human host.
Here, we describe the 2.4
Å structure of the hetero-tetrameric complex of the N-terminal domain of the ATPase EpsE and the cytoplasmic domain of the inner membrane protein EpsL, which constitute the major cytoplasmic components of the Eps-system. A stable fragment of EpsE in complex with the cytoplasmic domain of EpsL was identified
via limited proteolysis and facilitated the crystallization of the complex.
This first structure of a complex between two different proteins of the type II secretion system reveals that the N-terminal domain of EpsE and the cytoplasmic domain of EpsL form a hetero-tetramer, in which EpsL is the central dimer and EpsE binds on the periphery. The dimer of EpsL in this complex is very similar to the dimer seen in the crystal structure of the native cytoplasmic domain of EpsL, suggesting a possible physiological relevance despite a relatively small 675
Å
2 buried solvent accessible surface. The N-terminal domain of EpsE, which forms a compact domain with an α+β-fold, places its helix α2 in a mostly hydrophobic cleft between domains II and III of EpsL burying 1700
Å
2 solvent accessible surface. This extensive interface involves several residues whose hydrophobic or charged nature is well conserved and is therefore likely to be of general importance in type II secretion systems.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>15843017</pmid><doi>10.1016/j.jmb.2005.02.061</doi><tpages>11</tpages></addata></record> |
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subjects | Amino Acid Sequence Bacterial Proteins - chemistry Bacterial Proteins - genetics Bacterial Proteins - metabolism Binding Sites cholera toxin Crystallography, X-Ray EpsE EpsL Membrane Proteins - chemistry Membrane Proteins - genetics Membrane Proteins - metabolism Models, Molecular Molecular Sequence Data Protein Binding Protein Structure, Quaternary Protein Structure, Tertiary Sequence Alignment type II secretion Vibrio cholerae Vibrio cholerae - chemistry Vibrio cholerae - genetics Vibrio cholerae - metabolism |
title | The X-ray Structure of the Type II Secretion System Complex Formed by the N-terminal Domain of EpsE and the Cytoplasmic Domain of EpsL of Vibrio cholerae |
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