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The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae)
The complete nucleotide sequences of the mitochondrial genome (mitogenome) of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae), were determined. The 15,521-bp-long G. orientalis mitogenome contains typical gene complement, base composition, and codon usage found in meta...
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Published in: | Gene 2005-07, Vol.353 (2), p.155-168 |
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creator | Kim, Iksoo Cha, So Young Yoon, Myung Hee Hwang, Jae Sam Lee, Sang Mong Sohn, Hung Dae Jin, Byung Rae |
description | The complete nucleotide sequences of the mitochondrial genome (mitogenome) of the oriental mole cricket,
Gryllotalpa orientalis (Orthoptera: Gryllotalpidae), were determined. The 15,521-bp-long
G. orientalis mitogenome contains typical gene complement, base composition, and codon usage found in metazoan mitogenomes. The
G. orientalis mitogenome contains the third lowest A
+
T content (70.5%) among the complete insects mt genome sequences. The initiation codon for the
G. orientalis COI gene appears to be ATG, instead of the tetranucleotides, which have been postulated to act as initiation codon for
Locusta migratoria and some lepidopteran COI genes. The initiation codon for ND2 appears to be GTG, which is rare, but has been designated as an initiator of
Tricholepidion gertschi ND2. All anticodons of
G. orientalis tRNAs were identical to
Drosophila yakuba and
L. migratoria. The tRNA
Ser(AGN) could not form a stable stem loop structure in the DHU arm as shown in many other insect tRNA
Ser(AGN). Phylogenetic analysis of nucleotide sequence information from all mt genes supported a monophyletic Diptera, a monophyletic Lepidoptera, a monophyletic Coleoptera, a monophyletic Mecopterida (Diptera
+
Lepidoptera), and a monophyletic Endopterygota (Diptera
+
Lepidoptera
+
Coleoptera), suggesting that the complete insect mitogenome sequence has a resolving power to the diversification events within Endopterygota. However, the relationships of ancient insect orders were unstable, indicating the limited use of mitogenome information at deeper phylogenetic depth. |
doi_str_mv | 10.1016/j.gene.2005.04.019 |
format | article |
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Gryllotalpa orientalis (Orthoptera: Gryllotalpidae), were determined. The 15,521-bp-long
G. orientalis mitogenome contains typical gene complement, base composition, and codon usage found in metazoan mitogenomes. The
G. orientalis mitogenome contains the third lowest A
+
T content (70.5%) among the complete insects mt genome sequences. The initiation codon for the
G. orientalis COI gene appears to be ATG, instead of the tetranucleotides, which have been postulated to act as initiation codon for
Locusta migratoria and some lepidopteran COI genes. The initiation codon for ND2 appears to be GTG, which is rare, but has been designated as an initiator of
Tricholepidion gertschi ND2. All anticodons of
G. orientalis tRNAs were identical to
Drosophila yakuba and
L. migratoria. The tRNA
Ser(AGN) could not form a stable stem loop structure in the DHU arm as shown in many other insect tRNA
Ser(AGN). Phylogenetic analysis of nucleotide sequence information from all mt genes supported a monophyletic Diptera, a monophyletic Lepidoptera, a monophyletic Coleoptera, a monophyletic Mecopterida (Diptera
+
Lepidoptera), and a monophyletic Endopterygota (Diptera
+
Lepidoptera
+
Coleoptera), suggesting that the complete insect mitogenome sequence has a resolving power to the diversification events within Endopterygota. However, the relationships of ancient insect orders were unstable, indicating the limited use of mitogenome information at deeper phylogenetic depth.</description><identifier>ISSN: 0378-1119</identifier><identifier>EISSN: 1879-0038</identifier><identifier>DOI: 10.1016/j.gene.2005.04.019</identifier><identifier>PMID: 15950403</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Animals ; Base Sequence ; Cloning, Molecular ; Codon, Initiator ; Coleoptera ; Diptera ; DNA, Mitochondrial - genetics ; Drosophila yakuba ; Endopterygota ; Ensifera ; Genome ; Gryllidae ; Gryllidae - classification ; Gryllidae - genetics ; Gryllotalpa ; Gryllotalpa orientalis ; Gryllotalpidae ; Insect molecular phylogeny ; Lepidoptera ; Locusta migratoria ; Metazoa ; Mitochondrial genome ; Molecular Sequence Data ; Nucleic Acid Conformation ; Oriental mole cricket ; Orthoptera ; Phylogeny ; Polymerase Chain Reaction ; RNA, Ribosomal - chemistry ; RNA, Ribosomal - genetics ; RNA, Transfer - chemistry ; RNA, Transfer - genetics ; Sequence Homology, Nucleic Acid ; Tricholepidion gertschi</subject><ispartof>Gene, 2005-07, Vol.353 (2), p.155-168</ispartof><rights>2005 Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c482t-2547b01642e8a694d534ba96f5ad4f6abc9c38df301270920e8b32fd5c83f0c23</citedby><cites>FETCH-LOGICAL-c482t-2547b01642e8a694d534ba96f5ad4f6abc9c38df301270920e8b32fd5c83f0c23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15950403$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Iksoo</creatorcontrib><creatorcontrib>Cha, So Young</creatorcontrib><creatorcontrib>Yoon, Myung Hee</creatorcontrib><creatorcontrib>Hwang, Jae Sam</creatorcontrib><creatorcontrib>Lee, Sang Mong</creatorcontrib><creatorcontrib>Sohn, Hung Dae</creatorcontrib><creatorcontrib>Jin, Byung Rae</creatorcontrib><title>The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae)</title><title>Gene</title><addtitle>Gene</addtitle><description>The complete nucleotide sequences of the mitochondrial genome (mitogenome) of the oriental mole cricket,
Gryllotalpa orientalis (Orthoptera: Gryllotalpidae), were determined. The 15,521-bp-long
G. orientalis mitogenome contains typical gene complement, base composition, and codon usage found in metazoan mitogenomes. The
G. orientalis mitogenome contains the third lowest A
+
T content (70.5%) among the complete insects mt genome sequences. The initiation codon for the
G. orientalis COI gene appears to be ATG, instead of the tetranucleotides, which have been postulated to act as initiation codon for
Locusta migratoria and some lepidopteran COI genes. The initiation codon for ND2 appears to be GTG, which is rare, but has been designated as an initiator of
Tricholepidion gertschi ND2. All anticodons of
G. orientalis tRNAs were identical to
Drosophila yakuba and
L. migratoria. The tRNA
Ser(AGN) could not form a stable stem loop structure in the DHU arm as shown in many other insect tRNA
Ser(AGN). Phylogenetic analysis of nucleotide sequence information from all mt genes supported a monophyletic Diptera, a monophyletic Lepidoptera, a monophyletic Coleoptera, a monophyletic Mecopterida (Diptera
+
Lepidoptera), and a monophyletic Endopterygota (Diptera
+
Lepidoptera
+
Coleoptera), suggesting that the complete insect mitogenome sequence has a resolving power to the diversification events within Endopterygota. However, the relationships of ancient insect orders were unstable, indicating the limited use of mitogenome information at deeper phylogenetic depth.</description><subject>Animals</subject><subject>Base Sequence</subject><subject>Cloning, Molecular</subject><subject>Codon, Initiator</subject><subject>Coleoptera</subject><subject>Diptera</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Drosophila yakuba</subject><subject>Endopterygota</subject><subject>Ensifera</subject><subject>Genome</subject><subject>Gryllidae</subject><subject>Gryllidae - classification</subject><subject>Gryllidae - genetics</subject><subject>Gryllotalpa</subject><subject>Gryllotalpa orientalis</subject><subject>Gryllotalpidae</subject><subject>Insect molecular phylogeny</subject><subject>Lepidoptera</subject><subject>Locusta migratoria</subject><subject>Metazoa</subject><subject>Mitochondrial genome</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Conformation</subject><subject>Oriental mole cricket</subject><subject>Orthoptera</subject><subject>Phylogeny</subject><subject>Polymerase Chain Reaction</subject><subject>RNA, Ribosomal - chemistry</subject><subject>RNA, Ribosomal - genetics</subject><subject>RNA, Transfer - chemistry</subject><subject>RNA, Transfer - genetics</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Tricholepidion gertschi</subject><issn>0378-1119</issn><issn>1879-0038</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><recordid>eNqFkc9u1DAQhyMEokvhBTggnxBIJIwdO3EqLlUFBalSL-VsOfak6yWJg-1FKs_TB8XRLn9O1BdL429-I89XFC8pVBRo835X3eKMFQMQFfAKaPeo2FDZdiVALR8XG6hbWVJKu5PiWYw7yEcI9rQ4oaITwKHeFPc3WyTGT8uICcm8NyP65CySiN_3OBskerZknUN8uNWz-6mT8zPxA0m5c3LJm62fbXB6XDE_4e83HxzOKZcnP-YZwZlvmN6Ry3A3jj7XF_0HcZG8uQ5p65eEQZ_9wzir8e3z4smgx4gvjvdp8fXTx5uLz-XV9eWXi_Or0nDJUskEb_u8GM5Q6qbjVtS8110zCG350OjedKaWdqiBshY6Bij7mg1WGFkPYFh9Wrw-5C7B59_HpCYXDY6jntHvo2okUMqFfBDMSjgw-jBIW1E3kkIG2QE0wccYcFBLcJMOd4qCWm2rnVotrNFCAVfZdm56dUzf9xPavy1HvRn4cAAwb-2Hw6CicatV6wKapKx3_8v_BYsovnU</recordid><startdate>20050704</startdate><enddate>20050704</enddate><creator>Kim, Iksoo</creator><creator>Cha, So Young</creator><creator>Yoon, Myung Hee</creator><creator>Hwang, Jae Sam</creator><creator>Lee, Sang Mong</creator><creator>Sohn, Hung Dae</creator><creator>Jin, Byung Rae</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SS</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7TM</scope><scope>7X8</scope></search><sort><creationdate>20050704</creationdate><title>The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae)</title><author>Kim, Iksoo ; Cha, So Young ; Yoon, Myung Hee ; Hwang, Jae Sam ; Lee, Sang Mong ; Sohn, Hung Dae ; Jin, Byung Rae</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c482t-2547b01642e8a694d534ba96f5ad4f6abc9c38df301270920e8b32fd5c83f0c23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Animals</topic><topic>Base Sequence</topic><topic>Cloning, Molecular</topic><topic>Codon, Initiator</topic><topic>Coleoptera</topic><topic>Diptera</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Drosophila yakuba</topic><topic>Endopterygota</topic><topic>Ensifera</topic><topic>Genome</topic><topic>Gryllidae</topic><topic>Gryllidae - classification</topic><topic>Gryllidae - genetics</topic><topic>Gryllotalpa</topic><topic>Gryllotalpa orientalis</topic><topic>Gryllotalpidae</topic><topic>Insect molecular phylogeny</topic><topic>Lepidoptera</topic><topic>Locusta migratoria</topic><topic>Metazoa</topic><topic>Mitochondrial genome</topic><topic>Molecular Sequence Data</topic><topic>Nucleic Acid Conformation</topic><topic>Oriental mole cricket</topic><topic>Orthoptera</topic><topic>Phylogeny</topic><topic>Polymerase Chain Reaction</topic><topic>RNA, Ribosomal - chemistry</topic><topic>RNA, Ribosomal - genetics</topic><topic>RNA, Transfer - chemistry</topic><topic>RNA, Transfer - genetics</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Tricholepidion gertschi</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Iksoo</creatorcontrib><creatorcontrib>Cha, So Young</creatorcontrib><creatorcontrib>Yoon, Myung Hee</creatorcontrib><creatorcontrib>Hwang, Jae Sam</creatorcontrib><creatorcontrib>Lee, Sang Mong</creatorcontrib><creatorcontrib>Sohn, Hung Dae</creatorcontrib><creatorcontrib>Jin, Byung Rae</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Gene</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Iksoo</au><au>Cha, So Young</au><au>Yoon, Myung Hee</au><au>Hwang, Jae Sam</au><au>Lee, Sang Mong</au><au>Sohn, Hung Dae</au><au>Jin, Byung Rae</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae)</atitle><jtitle>Gene</jtitle><addtitle>Gene</addtitle><date>2005-07-04</date><risdate>2005</risdate><volume>353</volume><issue>2</issue><spage>155</spage><epage>168</epage><pages>155-168</pages><issn>0378-1119</issn><eissn>1879-0038</eissn><abstract>The complete nucleotide sequences of the mitochondrial genome (mitogenome) of the oriental mole cricket,
Gryllotalpa orientalis (Orthoptera: Gryllotalpidae), were determined. The 15,521-bp-long
G. orientalis mitogenome contains typical gene complement, base composition, and codon usage found in metazoan mitogenomes. The
G. orientalis mitogenome contains the third lowest A
+
T content (70.5%) among the complete insects mt genome sequences. The initiation codon for the
G. orientalis COI gene appears to be ATG, instead of the tetranucleotides, which have been postulated to act as initiation codon for
Locusta migratoria and some lepidopteran COI genes. The initiation codon for ND2 appears to be GTG, which is rare, but has been designated as an initiator of
Tricholepidion gertschi ND2. All anticodons of
G. orientalis tRNAs were identical to
Drosophila yakuba and
L. migratoria. The tRNA
Ser(AGN) could not form a stable stem loop structure in the DHU arm as shown in many other insect tRNA
Ser(AGN). Phylogenetic analysis of nucleotide sequence information from all mt genes supported a monophyletic Diptera, a monophyletic Lepidoptera, a monophyletic Coleoptera, a monophyletic Mecopterida (Diptera
+
Lepidoptera), and a monophyletic Endopterygota (Diptera
+
Lepidoptera
+
Coleoptera), suggesting that the complete insect mitogenome sequence has a resolving power to the diversification events within Endopterygota. However, the relationships of ancient insect orders were unstable, indicating the limited use of mitogenome information at deeper phylogenetic depth.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>15950403</pmid><doi>10.1016/j.gene.2005.04.019</doi><tpages>14</tpages></addata></record> |
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source | ScienceDirect Journals |
subjects | Animals Base Sequence Cloning, Molecular Codon, Initiator Coleoptera Diptera DNA, Mitochondrial - genetics Drosophila yakuba Endopterygota Ensifera Genome Gryllidae Gryllidae - classification Gryllidae - genetics Gryllotalpa Gryllotalpa orientalis Gryllotalpidae Insect molecular phylogeny Lepidoptera Locusta migratoria Metazoa Mitochondrial genome Molecular Sequence Data Nucleic Acid Conformation Oriental mole cricket Orthoptera Phylogeny Polymerase Chain Reaction RNA, Ribosomal - chemistry RNA, Ribosomal - genetics RNA, Transfer - chemistry RNA, Transfer - genetics Sequence Homology, Nucleic Acid Tricholepidion gertschi |
title | The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae) |
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