Signal assignment and secondary structure analysis of a uniformly [13C, 15N]-labeled membrane protein, H +-ATP synthase subunit c, by magic-angle spinning solid-state NMR

Signal assignment and secondary structural analysis of uniformly [13C, 15N] labeled H+-ATP synthase subunit c from E. coli (79 residues) in the solid state were carried out by two- and three-dimensional solid-state NMR under magic-angle spinning. The protein took on a unique structure even in the so...

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Bibliographic Details
Published in:Journal of biomolecular NMR 2006-12, Vol.36 (4), p.279-293
Main Authors: Kobayashi, Masatoshi, Matsuki, Yoh, Yumen, Ikuko, Fujiwara, Toshimichi, Akutsu, Hideo
Format: Article
Language:English
Subjects:
Amino Acid Sequence
ATP
Carbon Isotopes - chemistry
E coli
Magnetic Resonance Spectroscopy - methods
Membrane Proteins - chemistry
Molecular Sequence Data
Nitrogen Isotopes - chemistry
Protein Structure, Secondary
Proteins
Proton-Translocating ATPases - chemistry
Residues
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Structural analysis
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Summary:Signal assignment and secondary structural analysis of uniformly [13C, 15N] labeled H+-ATP synthase subunit c from E. coli (79 residues) in the solid state were carried out by two- and three-dimensional solid-state NMR under magic-angle spinning. The protein took on a unique structure even in the solid state from the 13C linewidths of about 1.7 ppm. On the basis of several inter- and intra-residue 13C-13C and 13C-15N chemical shift correlations, 78% of Calpha, 72% of Cbeta, 62% of C' and 61% of NH signals were assigned, which provided the secondary structure information for 84% of the 79 residues. Here, inter-residue correlations involving Gly, Ala, Pro and side-chains and a higher resolution in the 3D spectrum were significantly useful for the sequence specific assignment. On top of this, the 13C-13C correlation spectra of subunit c was analyzed by reproducing experimental cross peaks quantitatively with chemical shift prediction and signal-intensity calculation based on the structure. It revealed that the subunit c in the solid state could be specified by alpha-helices with a loop structure in the middle (at sequence 41-45) as in the case of the solution structure in spite of additional extended conformations at 76-79 at the C-terminus.
ISSN:0925-2738
1573-5001
DOI:10.1007/s10858-006-9094-x