Canonical Labeling of Proteome Maps

We propose a canonical labeling of proteome maps, which enables one to sort and catalog the maps in a simple way. The canonical label of a proteome map is based on the canonical labeling of vertexes of Hasse diagram embedded in the map resulting in the adjacency matrix, the rows of which when viewed...

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Bibliographic Details
Published in:Journal of proteome research 2005-07, Vol.4 (4), p.1347-1352
Main Authors: Randić, Milan, Lerš, Nella, Vukičević, Damir, Plavšić, Dejan, Gute, Brian D, Basak, Subhash C
Format: Article
Language:English
Subjects:
Algorithms
Animals
Hepatocytes - chemistry
Male
Models, Theoretical
Proteome
Rats
Rats, Inbred F344
Statistics as Topic - methods
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Summary:We propose a canonical labeling of proteome maps, which enables one to sort and catalog the maps in a simple way. The canonical label of a proteome map is based on the canonical labeling of vertexes of Hasse diagram embedded in the map resulting in the adjacency matrix, the rows of which when viewed as binary numbers are the smallest possible such numbers. The use of the approach in documentation is illustrated with the proteome maps of liver cells of healthy male Fisher F344 rats and the rats treated with different peroxisome proliferators. Keywords: proteome maps • canonical labeling • Hasse diagram • documentation • peroxisome proliferators
ISSN:1535-3893
1535-3907
DOI:10.1021/pr050049+