Structural and genetic characterization of the Shigella boydii type 18 O antigen

• Published in: Gene 2005-08, Vol.355, p.79-86
• Main Authors: Feng, Lu, Senchenkova, Sof'ya N., Wang, Wei, Shashkov, Alexander S., Liu, Bin, Shevelev, Sergei D., Liu, Dan, Knirel, Yuriy A., Wang, Lei
• Format: Article
• Language: English
• Subjects: Acetylation; Carbohydrate Sequence; Carbohydrates - biosynthesis; DNA, Bacterial - chemistry; DNA, Bacterial - genetics; Gas Chromatography-Mass Spectrometry; Gene Order; Genes, Bacterial - genetics; Glycosyltransferases - genetics; Magnetic Resonance Spectroscopy; Methylation; Molecular Sequence Data; Multigene Family - genetics; O antigen gene cluster; O Antigens - analysis; O Antigens - genetics; O Antigens - metabolism; O-polysaccharide structure; Sequence Analysis, DNA; Shigella boydii; Shigella boydii - genetics; Shigella boydii - metabolism
• ISSN: 0378-1119; 1879-0038
• DOI: 10.1016/j.gene.2005.06.001

Shigella strains are important human pathogens and are normally identified by their O antigens. O antigen is an essential part of the lipopolysaccharide present in the outer membrane of Gram-negative bacteria and plays a role in pathogenicity. Structural and genetic organization of the Shigella boydii type 18 O antigen was investigated. As judged by sugar and methylation analyses and NMR spectroscopy data, the O antigen has a linear pentasaccharide repeating unit (O unit), which consists of three l-rhamnose residues, and one residue each of d-galacturonic acid ( d-GalA) and N-acetylgalactosamine ( d-GalNAc), and the following structure of the O unit was established. →3)-β- l-Rha p-(1→4)-α- l-Rha p-(1→2)-α- l-Rha p-(1→2)-α- d-Gal pA-(1→3)-α- d-Gal pNAc-(1→ The O antigen gene cluster of S. boydii type 18, which contains nine open reading frames (ORFs), was found between galF and gnd. Based on homology, all of the ORFs were identified as O antigen synthesis genes, involved in the synthesis of rhamnose, transfer of sugars, and processing of O unit. Genes specific for S. boydii type 18 were identified, which can be potentially used for the development of a PCR-based assay for the identification and detection of this strain.