Salvaging Pyrococcus furiosus protein targets at SECSG

• Published in: Journal of structural and functional genomics 2005-09, Vol.6 (2-3), p.121-127
• Main Authors: Liu, Zhi-Jie, Shah, Ashit K, Habel, Jeff E, Ng, Joseph D, Kataeva, Irina, Xu, Hao, Horanyi, Peter, Yang, Hua, Chang, Jessie, Zhao, Min, Huang, Lei, Chang, Sue, Tempel, Wolfram, Chen, Lirong, Zhou, Weihong, Lee, Doowon, Lin, Dawei, Zhang, Hua, Newton, M Gary, Rose, John, Wang, Bi-Cheng
• Format: Article
• Language: English
• Subjects: Archaeal Proteins - genetics; Archaeal Proteins - isolation & purification; Bacteria; Cloning, Molecular; Crystal structure; Crystallization; Crystallography - methods; Crystals; Gene Expression; Genetics; genomics; Ionizing radiation; Methylation; Models, Molecular; N.M.R; Neutrons; Open reading frames; protein purification; Proteins; Proteomics - methods; Pyrococcus furiosus; Pyrococcus furiosus - chemistry; Selenium; Structure-function relationships; X-ray diffraction; X-Ray Diffraction - methods
• ISSN: 1345-711X; 1570-0267
• DOI: 10.1007/s10969-005-5242-x

Proteins derived from the coding regions of Pyrococcus furiosus are targets for three-dimensional X-ray and NMR structure determination by the Southeast Collaboratory for Structural Genomics (SECSG). Of the 2,200 open reading frames (ORFs) in this organism, 220 protein targets were cloned and expressed in a high-throughput (HT) recombinant system for crystallographic studies. However, only 96 of the expressed proteins could be crystallized and, of these, only 15 have led to structures. To address this issue, SECSG has recently developed a two-tier approach to protein production and crystallization. In this approach, tier-1 efforts are focused on producing protein for new Pfu(italics?) targets using a high-throughput approach. Tier-2 protein production efforts support tier-1 activities by (1) producing additional protein for further crystallization trials, (2) producing modified protein (further purification, methylation, tag removal, selenium labeling, etc) as required and (3) serving as a salvaging pathway for failed tier-1 proteins. In a recent study using this two-tiered approach, nine structures were determined from a set of 50 Pfu proteins, which failed to produce crystals suitable for X-ray diffraction analysis. These results validate this approach and suggest that it has application to other HT crystal structure determination applications.