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Molecular Characterization of Avian Infectious Bronchitis Virus Strains Isolated in Colombia During 2003
Sixteen infectious bronchitis virus (IBV) isolates were recovered from broilers and layers from five geographic poultry regions in Colombia. The viruses were isolated from tracheas, lungs, and cecal tonsils of birds, previously vaccinated with the Massachusetts strain, that were showing respiratory...
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| Published in: | Avian diseases 2005-12, Vol.49 (4), p.494-499 |
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| Main Authors: | , , , |
| Format: | Article |
| Language: | English |
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| cites | cdi_FETCH-LOGICAL-b375t-a1b24062af1379f2a83436c144ddbf73be6d6fd0f45b3f04dcc036429406dfc23 |
| container_end_page | 499 |
| container_issue | 4 |
| container_start_page | 494 |
| container_title | Avian diseases |
| container_volume | 49 |
| creator | Alvarado, I. R Villegas, P Mossos, N Jackwood, M. W |
| description | Sixteen infectious bronchitis virus (IBV) isolates were recovered from broilers and layers from five geographic poultry regions in Colombia. The viruses were isolated from tracheas, lungs, and cecal tonsils of birds, previously vaccinated with the Massachusetts strain, that were showing respiratory signs. Further analysis of the IBV isolates was achieved by phylogenetic analysis comparing their deduced amino acid sequences in the hypervariable region 1 of the S1 gene with reference strains. Four unique genotype clusters containing isolates with indigenous genotypes were observed. One isolate was found to be the Connecticut genotype and three isolates were found to be the Massachusetts genotype. |
| doi_str_mv | 10.1637/7202-050304R.1 |
| format | article |
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One isolate was found to be the Connecticut genotype and three isolates were found to be the Massachusetts genotype.</description><identifier>ISSN: 0005-2086</identifier><identifier>EISSN: 1938-4351</identifier><identifier>DOI: 10.1637/7202-050304R.1</identifier><identifier>PMID: 16404989</identifier><language>eng</language><publisher>United States: American Association of Avian Pathologists, Inc</publisher><subject>amino acid sequences ; Amino acids ; Animals ; Base Sequence ; broiler chickens ; Chickens ; Chickens - virology ; Colombia ; Coronavirus Infections - veterinary ; Coronavirus Infections - virology ; cycle sequencing ; Female ; genes ; Genes, Viral ; genetic variation ; Genotype ; Genotypes ; Geographic regions ; geographical variation ; Glycoproteins ; HVR = hypervariable region ; IB = infectious bronchitis ; IBV ; IBV = infectious bronchitis virus ; infectious bronchitis ; Infectious bronchitis virus ; Infectious bronchitis virus - classification ; Infectious bronchitis virus - genetics ; Infectious bronchitis virus - isolation & purification ; laying hens ; lungs ; molecular sequence data ; Phylogeny ; Polymerase chain reaction ; Poultry Diseases - virology ; Regular s ; Reverse transcriptase polymerase chain reaction ; RNA, Viral - genetics ; RNA, Viral - isolation & purification ; RT-PCR ; RT-PCR = reverse transcriptase–polymerase chain reaction ; S glycoprotein = spike glycoprotein ; S1 gene ; SPF = specific-pathogen-free ; strain differences ; strains ; tonsils ; trachea (vertebrates) ; Vaccination ; variants ; viral proteins ; Viruses</subject><ispartof>Avian diseases, 2005-12, Vol.49 (4), p.494-499</ispartof><rights>American Association of Avian Pathologists</rights><rights>Copyright 2005 American Association of Avian Pathologists, Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-b375t-a1b24062af1379f2a83436c144ddbf73be6d6fd0f45b3f04dcc036429406dfc23</citedby><cites>FETCH-LOGICAL-b375t-a1b24062af1379f2a83436c144ddbf73be6d6fd0f45b3f04dcc036429406dfc23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/4099192$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/4099192$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,58238,58471</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16404989$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Alvarado, I. R</creatorcontrib><creatorcontrib>Villegas, P</creatorcontrib><creatorcontrib>Mossos, N</creatorcontrib><creatorcontrib>Jackwood, M. W</creatorcontrib><title>Molecular Characterization of Avian Infectious Bronchitis Virus Strains Isolated in Colombia During 2003</title><title>Avian diseases</title><addtitle>Avian Dis</addtitle><description>Sixteen infectious bronchitis virus (IBV) isolates were recovered from broilers and layers from five geographic poultry regions in Colombia. The viruses were isolated from tracheas, lungs, and cecal tonsils of birds, previously vaccinated with the Massachusetts strain, that were showing respiratory signs. Further analysis of the IBV isolates was achieved by phylogenetic analysis comparing their deduced amino acid sequences in the hypervariable region 1 of the S1 gene with reference strains. Four unique genotype clusters containing isolates with indigenous genotypes were observed. One isolate was found to be the Connecticut genotype and three isolates were found to be the Massachusetts genotype.</description><subject>amino acid sequences</subject><subject>Amino acids</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>broiler chickens</subject><subject>Chickens</subject><subject>Chickens - virology</subject><subject>Colombia</subject><subject>Coronavirus Infections - veterinary</subject><subject>Coronavirus Infections - virology</subject><subject>cycle sequencing</subject><subject>Female</subject><subject>genes</subject><subject>Genes, Viral</subject><subject>genetic variation</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>Geographic regions</subject><subject>geographical variation</subject><subject>Glycoproteins</subject><subject>HVR = hypervariable region</subject><subject>IB = infectious bronchitis</subject><subject>IBV</subject><subject>IBV = infectious bronchitis virus</subject><subject>infectious bronchitis</subject><subject>Infectious bronchitis virus</subject><subject>Infectious bronchitis virus - classification</subject><subject>Infectious bronchitis virus - genetics</subject><subject>Infectious bronchitis virus - isolation & purification</subject><subject>laying hens</subject><subject>lungs</subject><subject>molecular sequence data</subject><subject>Phylogeny</subject><subject>Polymerase chain reaction</subject><subject>Poultry Diseases - virology</subject><subject>Regular s</subject><subject>Reverse transcriptase polymerase chain reaction</subject><subject>RNA, Viral - genetics</subject><subject>RNA, Viral - isolation & purification</subject><subject>RT-PCR</subject><subject>RT-PCR = reverse transcriptase–polymerase chain reaction</subject><subject>S glycoprotein = spike glycoprotein</subject><subject>S1 gene</subject><subject>SPF = specific-pathogen-free</subject><subject>strain differences</subject><subject>strains</subject><subject>tonsils</subject><subject>trachea (vertebrates)</subject><subject>Vaccination</subject><subject>variants</subject><subject>viral proteins</subject><subject>Viruses</subject><issn>0005-2086</issn><issn>1938-4351</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><recordid>eNqFkM1PGzEQxa2qqITQa09V6xMnNh1_rDc-0pSPSKBKpOnV8nptYrSxwd5Fgr-ejTaCI6eRZn7z5s1D6BuBGRGs-lVRoAWUwIDfzsgnNCGSzQvOSvIZTQCgLCjMxSE6yvkegFRSwBd0SAQHLudygjY3sbWmb3XCi41O2nQ2-Rfd-RhwdPjsyeuAl8FZM7T6jH-nGMzGdz7j_z4NjVWXtA8ZL3NsdWcb7ANexDZua6_xnz75cIcpADtGB0632X7d1ylaX5z_W1wV138vl4uz66JmVdkVmtSUg6DaEVZJR_WccSYM4bxpalex2opGuAYcL2vmgDfGABOcymGpcYayKToZdR9SfOxt7tTWZ2PbVgc7PKCEBCGrQXSKZiNoUsw5Wacekt_q9KwIqF22apet2meryLDwY6_c11vbvOP7MAfg-wjc5y6mtzkHKYncOfs5jp2OSt8ln9V6RYEwIMMRXu2I05GofYzBfmToFduFlCc</recordid><startdate>20051201</startdate><enddate>20051201</enddate><creator>Alvarado, I. R</creator><creator>Villegas, P</creator><creator>Mossos, N</creator><creator>Jackwood, M. W</creator><general>American Association of Avian Pathologists, Inc</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20051201</creationdate><title>Molecular Characterization of Avian Infectious Bronchitis Virus Strains Isolated in Colombia During 2003</title><author>Alvarado, I. R ; Villegas, P ; Mossos, N ; Jackwood, M. W</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b375t-a1b24062af1379f2a83436c144ddbf73be6d6fd0f45b3f04dcc036429406dfc23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>amino acid sequences</topic><topic>Amino acids</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>broiler chickens</topic><topic>Chickens</topic><topic>Chickens - virology</topic><topic>Colombia</topic><topic>Coronavirus Infections - veterinary</topic><topic>Coronavirus Infections - virology</topic><topic>cycle sequencing</topic><topic>Female</topic><topic>genes</topic><topic>Genes, Viral</topic><topic>genetic variation</topic><topic>Genotype</topic><topic>Genotypes</topic><topic>Geographic regions</topic><topic>geographical variation</topic><topic>Glycoproteins</topic><topic>HVR = hypervariable region</topic><topic>IB = infectious bronchitis</topic><topic>IBV</topic><topic>IBV = infectious bronchitis virus</topic><topic>infectious bronchitis</topic><topic>Infectious bronchitis virus</topic><topic>Infectious bronchitis virus - classification</topic><topic>Infectious bronchitis virus - genetics</topic><topic>Infectious bronchitis virus - isolation & purification</topic><topic>laying hens</topic><topic>lungs</topic><topic>molecular sequence data</topic><topic>Phylogeny</topic><topic>Polymerase chain reaction</topic><topic>Poultry Diseases - virology</topic><topic>Regular s</topic><topic>Reverse transcriptase polymerase chain reaction</topic><topic>RNA, Viral - genetics</topic><topic>RNA, Viral - isolation & purification</topic><topic>RT-PCR</topic><topic>RT-PCR = reverse transcriptase–polymerase chain reaction</topic><topic>S glycoprotein = spike glycoprotein</topic><topic>S1 gene</topic><topic>SPF = specific-pathogen-free</topic><topic>strain differences</topic><topic>strains</topic><topic>tonsils</topic><topic>trachea (vertebrates)</topic><topic>Vaccination</topic><topic>variants</topic><topic>viral proteins</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Alvarado, I. R</creatorcontrib><creatorcontrib>Villegas, P</creatorcontrib><creatorcontrib>Mossos, N</creatorcontrib><creatorcontrib>Jackwood, M. W</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Avian diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Alvarado, I. R</au><au>Villegas, P</au><au>Mossos, N</au><au>Jackwood, M. 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| ispartof | Avian diseases, 2005-12, Vol.49 (4), p.494-499 |
| issn | 0005-2086 1938-4351 |
| language | eng |
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| source | JSTOR Archival Journals and Primary Sources Collection |
| subjects | amino acid sequences Amino acids Animals Base Sequence broiler chickens Chickens Chickens - virology Colombia Coronavirus Infections - veterinary Coronavirus Infections - virology cycle sequencing Female genes Genes, Viral genetic variation Genotype Genotypes Geographic regions geographical variation Glycoproteins HVR = hypervariable region IB = infectious bronchitis IBV IBV = infectious bronchitis virus infectious bronchitis Infectious bronchitis virus Infectious bronchitis virus - classification Infectious bronchitis virus - genetics Infectious bronchitis virus - isolation & purification laying hens lungs molecular sequence data Phylogeny Polymerase chain reaction Poultry Diseases - virology Regular s Reverse transcriptase polymerase chain reaction RNA, Viral - genetics RNA, Viral - isolation & purification RT-PCR RT-PCR = reverse transcriptase–polymerase chain reaction S glycoprotein = spike glycoprotein S1 gene SPF = specific-pathogen-free strain differences strains tonsils trachea (vertebrates) Vaccination variants viral proteins Viruses |
| title | Molecular Characterization of Avian Infectious Bronchitis Virus Strains Isolated in Colombia During 2003 |
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