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Genomic diversity and molecular differentiation of Riemerella anatipestifer associated with eight outbreaks in five farms
Riemerella anatipestifer causes infectious serositis of ducks and geese. The genomic diversity of R. anatipestifer associated with outbreaks in waterfowls was studied using 24 multidrug-resistant R. anatipestifer isolates collected from the visceral organs of ducks and geese from seven outbreaks in...
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Published in: | Avian pathology 2008-06, Vol.37 (3), p.273-279 |
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description | Riemerella anatipestifer causes infectious serositis of ducks and geese. The genomic diversity of R. anatipestifer associated with outbreaks in waterfowls was studied using 24 multidrug-resistant R. anatipestifer isolates collected from the visceral organs of ducks and geese from seven outbreaks in four goose farms and one outbreak in one duck farm. Seven methods were used to differentiate these isolates. Plasmid patterns differed in plasmid number and size, ranging from 2.9 kb to 20 kb, and provided seven profiles. Divergent nucleotide sequences (predominant in 670 to 830 base pairs) of the ompA gene categorized the 24 isolates into three groups based on cluster analysis and polymerase chain reaction-restriction fragment length polymorphism. Repetitive-sequence polymerase chain reaction and pulsed-field gel electrophoresis analysis revealed the highest genotypic variations among the isolates. Genotypes and serotypes differed among farms and within the same farm and even within a single goose. In conclusion, a difference in R. anatipestifer genotypes and serotypes was observed for multiple outbreaks in waterfowls. |
doi_str_mv | 10.1080/03079450802056546 |
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The genomic diversity of R. anatipestifer associated with outbreaks in waterfowls was studied using 24 multidrug-resistant R. anatipestifer isolates collected from the visceral organs of ducks and geese from seven outbreaks in four goose farms and one outbreak in one duck farm. Seven methods were used to differentiate these isolates. Plasmid patterns differed in plasmid number and size, ranging from 2.9 kb to 20 kb, and provided seven profiles. Divergent nucleotide sequences (predominant in 670 to 830 base pairs) of the ompA gene categorized the 24 isolates into three groups based on cluster analysis and polymerase chain reaction-restriction fragment length polymorphism. Repetitive-sequence polymerase chain reaction and pulsed-field gel electrophoresis analysis revealed the highest genotypic variations among the isolates. Genotypes and serotypes differed among farms and within the same farm and even within a single goose. In conclusion, a difference in R. anatipestifer genotypes and serotypes was observed for multiple outbreaks in waterfowls.</description><identifier>ISSN: 0307-9457</identifier><identifier>EISSN: 1465-3338</identifier><identifier>DOI: 10.1080/03079450802056546</identifier><identifier>PMID: 18568653</identifier><language>eng</language><publisher>England: Taylor & Francis Group</publisher><subject>Animals ; Bacteria ; bacterial infections ; Base Sequence ; Cluster analysis ; disease outbreaks ; Disease Outbreaks - veterinary ; DNA, Bacterial - genetics ; Drug resistance ; ducks ; Ducks - microbiology ; farms ; geese ; Geese - microbiology ; Genetic Variation ; Genome, Bacterial ; Genomics ; genotype ; Genotype & phenotype ; Gram-Negative Bacteria - genetics ; Gram-Negative Bacterial Infections - epidemiology ; Gram-Negative Bacterial Infections - microbiology ; Gram-Negative Bacterial Infections - veterinary ; infectious serositis ; microbial genetics ; molecular seqence data ; multiple drug resistance ; nucleotide sequences ; pathogen identification ; Pathology ; Phylogeny ; plasmid profiling ; plasmids ; polymerase chain reaction ; Polymorphism ; poultry diseases ; Poultry Diseases - epidemiology ; Poultry Diseases - microbiology ; pulsed-field restriction fragment length polymorphism ; repetitive-sequence polymerase chain reaction ; restriction fragment length polymorphism ; Riemerella anatipestifer ; serotypes ; Wildfowl</subject><ispartof>Avian pathology, 2008-06, Vol.37 (3), p.273-279</ispartof><rights>Copyright Houghton Trust Ltd 2008</rights><rights>Copyright Taylor & Francis Ltd. Jun 2008</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c451t-fed9c3473d98b87b9ea9736289ce13345837e7b0296b705094a5c7ae74f3f8e3</citedby><cites>FETCH-LOGICAL-c451t-fed9c3473d98b87b9ea9736289ce13345837e7b0296b705094a5c7ae74f3f8e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18568653$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yu, C.Y</creatorcontrib><creatorcontrib>Liu, Y.W</creatorcontrib><creatorcontrib>Chou, S.J</creatorcontrib><creatorcontrib>Chao, M.R</creatorcontrib><creatorcontrib>Weng, B.C</creatorcontrib><creatorcontrib>Tsay, J.G</creatorcontrib><creatorcontrib>Chiu, C.H</creatorcontrib><creatorcontrib>Wu, C.C</creatorcontrib><creatorcontrib>Lin, T.L</creatorcontrib><creatorcontrib>Chang, C.C</creatorcontrib><title>Genomic diversity and molecular differentiation of Riemerella anatipestifer associated with eight outbreaks in five farms</title><title>Avian pathology</title><addtitle>Avian Pathol</addtitle><description>Riemerella anatipestifer causes infectious serositis of ducks and geese. The genomic diversity of R. anatipestifer associated with outbreaks in waterfowls was studied using 24 multidrug-resistant R. anatipestifer isolates collected from the visceral organs of ducks and geese from seven outbreaks in four goose farms and one outbreak in one duck farm. Seven methods were used to differentiate these isolates. Plasmid patterns differed in plasmid number and size, ranging from 2.9 kb to 20 kb, and provided seven profiles. Divergent nucleotide sequences (predominant in 670 to 830 base pairs) of the ompA gene categorized the 24 isolates into three groups based on cluster analysis and polymerase chain reaction-restriction fragment length polymorphism. Repetitive-sequence polymerase chain reaction and pulsed-field gel electrophoresis analysis revealed the highest genotypic variations among the isolates. Genotypes and serotypes differed among farms and within the same farm and even within a single goose. In conclusion, a difference in R. anatipestifer genotypes and serotypes was observed for multiple outbreaks in waterfowls.</description><subject>Animals</subject><subject>Bacteria</subject><subject>bacterial infections</subject><subject>Base Sequence</subject><subject>Cluster analysis</subject><subject>disease outbreaks</subject><subject>Disease Outbreaks - veterinary</subject><subject>DNA, Bacterial - genetics</subject><subject>Drug resistance</subject><subject>ducks</subject><subject>Ducks - microbiology</subject><subject>farms</subject><subject>geese</subject><subject>Geese - microbiology</subject><subject>Genetic Variation</subject><subject>Genome, Bacterial</subject><subject>Genomics</subject><subject>genotype</subject><subject>Genotype & phenotype</subject><subject>Gram-Negative Bacteria - genetics</subject><subject>Gram-Negative Bacterial Infections - epidemiology</subject><subject>Gram-Negative Bacterial Infections - microbiology</subject><subject>Gram-Negative Bacterial Infections - veterinary</subject><subject>infectious serositis</subject><subject>microbial genetics</subject><subject>molecular seqence data</subject><subject>multiple drug resistance</subject><subject>nucleotide sequences</subject><subject>pathogen identification</subject><subject>Pathology</subject><subject>Phylogeny</subject><subject>plasmid profiling</subject><subject>plasmids</subject><subject>polymerase chain reaction</subject><subject>Polymorphism</subject><subject>poultry diseases</subject><subject>Poultry Diseases - epidemiology</subject><subject>Poultry Diseases - microbiology</subject><subject>pulsed-field restriction fragment length polymorphism</subject><subject>repetitive-sequence polymerase chain reaction</subject><subject>restriction fragment length polymorphism</subject><subject>Riemerella anatipestifer</subject><subject>serotypes</subject><subject>Wildfowl</subject><issn>0307-9457</issn><issn>1465-3338</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqFkc9rFDEcxYModq3-AV40ePA2mh-TZAJeStEqFASt55DJfNOmziRrkrHuf2-WXRAs6Cnh5fNeHjyEnlPyhpKBvCWcKN2LdmVESNHLB2hDeyk6zvnwEG32710D1Al6UsotIUQKwR6jEzoIOUjBN2h3ATEtweEp_IRcQt1hGye8pBncOtvcdO8hQ6zB1pAiTh5_CbA0aZ5tY5u6hVJDg7AtJbnGwYTvQr3BEK5vKk5rHTPY7wWHiH37Bnubl_IUPfJ2LvDseJ6iqw_vr84_dpefLz6dn112rhe0dh4m7Xiv-KSHcVCjBqsVl2zQDijnvRi4AjUSpuWoiCC6t8IpC6r33A_AT9HrQ-w2px9ra2qWUNy-fIS0FiM144wK2cBXf4G3ac2xVTOM9JJxJViD6AFyOZWSwZttDovNO0OJ2W9i7m3SPC-Oweu4wPTHcRyhAeoAhOhTXuxdyvNkqt3NKftsowvlfqypv2pzvvuvk_-r2cuD3dtk7HVu9LevjFBOiCaaMc1_A1omtsQ</recordid><startdate>200806</startdate><enddate>200806</enddate><creator>Yu, C.Y</creator><creator>Liu, Y.W</creator><creator>Chou, S.J</creator><creator>Chao, M.R</creator><creator>Weng, B.C</creator><creator>Tsay, J.G</creator><creator>Chiu, C.H</creator><creator>Wu, C.C</creator><creator>Lin, T.L</creator><creator>Chang, C.C</creator><general>Taylor & Francis Group</general><general>Taylor & Francis Ltd</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T5</scope><scope>7TM</scope><scope>7U7</scope><scope>7U9</scope><scope>C1K</scope><scope>F1W</scope><scope>H94</scope><scope>H95</scope><scope>K9.</scope><scope>L.G</scope><scope>M7N</scope><scope>7X8</scope></search><sort><creationdate>200806</creationdate><title>Genomic diversity and molecular differentiation of Riemerella anatipestifer associated with eight outbreaks in five farms</title><author>Yu, C.Y ; Liu, Y.W ; Chou, S.J ; Chao, M.R ; Weng, B.C ; Tsay, J.G ; Chiu, C.H ; Wu, C.C ; Lin, T.L ; Chang, C.C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c451t-fed9c3473d98b87b9ea9736289ce13345837e7b0296b705094a5c7ae74f3f8e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Animals</topic><topic>Bacteria</topic><topic>bacterial infections</topic><topic>Base Sequence</topic><topic>Cluster analysis</topic><topic>disease outbreaks</topic><topic>Disease Outbreaks - veterinary</topic><topic>DNA, Bacterial - genetics</topic><topic>Drug resistance</topic><topic>ducks</topic><topic>Ducks - microbiology</topic><topic>farms</topic><topic>geese</topic><topic>Geese - microbiology</topic><topic>Genetic Variation</topic><topic>Genome, Bacterial</topic><topic>Genomics</topic><topic>genotype</topic><topic>Genotype & phenotype</topic><topic>Gram-Negative Bacteria - genetics</topic><topic>Gram-Negative Bacterial Infections - epidemiology</topic><topic>Gram-Negative Bacterial Infections - microbiology</topic><topic>Gram-Negative Bacterial Infections - veterinary</topic><topic>infectious serositis</topic><topic>microbial genetics</topic><topic>molecular seqence data</topic><topic>multiple drug resistance</topic><topic>nucleotide sequences</topic><topic>pathogen identification</topic><topic>Pathology</topic><topic>Phylogeny</topic><topic>plasmid profiling</topic><topic>plasmids</topic><topic>polymerase chain reaction</topic><topic>Polymorphism</topic><topic>poultry diseases</topic><topic>Poultry Diseases - epidemiology</topic><topic>Poultry Diseases - microbiology</topic><topic>pulsed-field restriction fragment length polymorphism</topic><topic>repetitive-sequence polymerase chain reaction</topic><topic>restriction fragment length polymorphism</topic><topic>Riemerella anatipestifer</topic><topic>serotypes</topic><topic>Wildfowl</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yu, C.Y</creatorcontrib><creatorcontrib>Liu, Y.W</creatorcontrib><creatorcontrib>Chou, S.J</creatorcontrib><creatorcontrib>Chao, M.R</creatorcontrib><creatorcontrib>Weng, B.C</creatorcontrib><creatorcontrib>Tsay, J.G</creatorcontrib><creatorcontrib>Chiu, C.H</creatorcontrib><creatorcontrib>Wu, C.C</creatorcontrib><creatorcontrib>Lin, T.L</creatorcontrib><creatorcontrib>Chang, C.C</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Immunology Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><jtitle>Avian pathology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yu, C.Y</au><au>Liu, Y.W</au><au>Chou, S.J</au><au>Chao, M.R</au><au>Weng, B.C</au><au>Tsay, J.G</au><au>Chiu, C.H</au><au>Wu, C.C</au><au>Lin, T.L</au><au>Chang, C.C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic diversity and molecular differentiation of Riemerella anatipestifer associated with eight outbreaks in five farms</atitle><jtitle>Avian pathology</jtitle><addtitle>Avian Pathol</addtitle><date>2008-06</date><risdate>2008</risdate><volume>37</volume><issue>3</issue><spage>273</spage><epage>279</epage><pages>273-279</pages><issn>0307-9457</issn><eissn>1465-3338</eissn><abstract>Riemerella anatipestifer causes infectious serositis of ducks and geese. The genomic diversity of R. anatipestifer associated with outbreaks in waterfowls was studied using 24 multidrug-resistant R. anatipestifer isolates collected from the visceral organs of ducks and geese from seven outbreaks in four goose farms and one outbreak in one duck farm. Seven methods were used to differentiate these isolates. Plasmid patterns differed in plasmid number and size, ranging from 2.9 kb to 20 kb, and provided seven profiles. Divergent nucleotide sequences (predominant in 670 to 830 base pairs) of the ompA gene categorized the 24 isolates into three groups based on cluster analysis and polymerase chain reaction-restriction fragment length polymorphism. Repetitive-sequence polymerase chain reaction and pulsed-field gel electrophoresis analysis revealed the highest genotypic variations among the isolates. Genotypes and serotypes differed among farms and within the same farm and even within a single goose. In conclusion, a difference in R. anatipestifer genotypes and serotypes was observed for multiple outbreaks in waterfowls.</abstract><cop>England</cop><pub>Taylor & Francis Group</pub><pmid>18568653</pmid><doi>10.1080/03079450802056546</doi><tpages>7</tpages></addata></record> |
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subjects | Animals Bacteria bacterial infections Base Sequence Cluster analysis disease outbreaks Disease Outbreaks - veterinary DNA, Bacterial - genetics Drug resistance ducks Ducks - microbiology farms geese Geese - microbiology Genetic Variation Genome, Bacterial Genomics genotype Genotype & phenotype Gram-Negative Bacteria - genetics Gram-Negative Bacterial Infections - epidemiology Gram-Negative Bacterial Infections - microbiology Gram-Negative Bacterial Infections - veterinary infectious serositis microbial genetics molecular seqence data multiple drug resistance nucleotide sequences pathogen identification Pathology Phylogeny plasmid profiling plasmids polymerase chain reaction Polymorphism poultry diseases Poultry Diseases - epidemiology Poultry Diseases - microbiology pulsed-field restriction fragment length polymorphism repetitive-sequence polymerase chain reaction restriction fragment length polymorphism Riemerella anatipestifer serotypes Wildfowl |
title | Genomic diversity and molecular differentiation of Riemerella anatipestifer associated with eight outbreaks in five farms |
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