Solution Structure and Dynamics of G1TE, a Nonphosphorylated Cyclic Peptide Inhibitor for the Grb2 SH2 Domain

• Published in: Archives of biochemistry and biophysics 1999-12, Vol.372 (2), p.309-314
• Main Authors: Lou, Yuan-Chao, Lung, Feng-Di T., Pai, Ming-Tao, Tzeng, Shiou-Ru, Wei, Sue-Yee, Roller, Peter P., Cheng, Jya-Wei
• Format: Article
• Language: English
• Subjects: Adaptor Proteins, Signal Transducing; Amino Acid Sequence; Binding Sites; drug design; GRB2 Adaptor Protein; Humans; Hydrogen Bonding; Ligands; Models, Molecular; Molecular Sequence Data; nuclear magnetic resonance; Nuclear Magnetic Resonance, Biomolecular; Peptides, Cyclic - chemical synthesis; Peptides, Cyclic - chemistry; Peptides, Cyclic - metabolism; Peptides, Cyclic - pharmacology; Phosphorylation; Protein Conformation; Proteins - antagonists & inhibitors; Proteins - chemistry; Proteins - metabolism; signal transduction; solution structure; Solutions; src Homology Domains; Structure-Activity Relationship; Temperature; Thermodynamics
• ISSN: 0003-9861; 1096-0384
• DOI: 10.1006/abbi.1999.1513

The solution structure and dynamics of G1TE, a nonphosphorylated cyclic peptide inhibitor for the Grb2 SH2 domain, was determined using two-dimensional NMR and simulated annealing methods. G1TE consists of 10 amino acids and a C-terminal Cys cyclized through its side-chain sulfur atom by a thioether linkage to its N terminus. The results indicate that G1TE assumes a circle-like shape in solution in which all the side chains are protruding outside, and none of the residues are involved in intramolecular hydrogen bonding. The average root-mean-square deviations were found to be 0.41 ± 0.11 Å for the backbone heavy atoms C, Cα, and N, and 1.03 ± 0.14 Å for all heavy atoms in a family of 10 structures. 15N relaxation measurements indicate that G1TE has rather restricted dynamics in the fast time scale within its backbone. However, residues Tyr3, Val6, and Gly7 may be involved in a possible conformational exchange. The structural comparison between G1TE in solution and the BCR-Abl phosphopeptide bound to Grb2 SH2 domain revealed that G1TE may form a larger circle-like binding surface than the BCR-Abl phosphopeptide in the bound form. Also, the restricted backbone dynamics of G1TE may result in a reduced loss of entropy and can compensate for the absence of a phosphate group at the Tyr3 position. These structural and dynamic properties of G1TE may provide a molecular basis for understanding its interactions with the Grb2 SH2 domain.