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Coordination Properties of the Oxime Analogue of Glycine to Cu(II)
The coordination of Cu2+ by glyoxilic acid oxime (gao) − the oxime analogue of glycine amino acid − and its deprotonated (gao- and gao2-) species has been studied with different density functional methods. Single-point calculations have also been carried out at the single- and double- (triple) excit...
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Published in: | The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory Molecules, spectroscopy, kinetics, environment, & general theory, 2005-06, Vol.109 (25), p.5668-5676 |
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creator | Georgieva, I Trendafilova, N Rodríguez-Santiago, L Sodupe, M |
description | The coordination of Cu2+ by glyoxilic acid oxime (gao) − the oxime analogue of glycine amino acid − and its deprotonated (gao- and gao2-) species has been studied with different density functional methods. Single-point calculations have also been carried out at the single- and double- (triple) excitation coupled-cluster (CCSD(T)) level of theory. The isomers studied involve coordination of Cu2+ to electron-rich sites (O,N) of neutral, anionic, and dianionic gao species in different conformations. In contrast to Cu2+−glycine, for which the ground-state structure is bidentate with the CO2 - terminus of zwitterionic glycine, for Cu2+−gao the most stable isomer shows monodentate binding of Cu2+ with the carbonylic oxygen of the neutral form. The most stable complexes of Cu2+ interacting with deprotonated gao species (gao- and gao2-) also take place through the carboxylic oxygens but in a bidentate manner. The results with different functionals show that, for these open shell (Cu2+−L) systems, the relative stability of complexes with different coordination environments (and so, different spin distribution) can be quite sensitive to the amount of “Hartree−Fock” exchange included in the functional. Among all the functionals tested in this work, the BHandHLYP is the one that better compares to CCSD(T) results. |
doi_str_mv | 10.1021/jp050626h |
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Single-point calculations have also been carried out at the single- and double- (triple) excitation coupled-cluster (CCSD(T)) level of theory. The isomers studied involve coordination of Cu2+ to electron-rich sites (O,N) of neutral, anionic, and dianionic gao species in different conformations. In contrast to Cu2+−glycine, for which the ground-state structure is bidentate with the CO2 - terminus of zwitterionic glycine, for Cu2+−gao the most stable isomer shows monodentate binding of Cu2+ with the carbonylic oxygen of the neutral form. The most stable complexes of Cu2+ interacting with deprotonated gao species (gao- and gao2-) also take place through the carboxylic oxygens but in a bidentate manner. The results with different functionals show that, for these open shell (Cu2+−L) systems, the relative stability of complexes with different coordination environments (and so, different spin distribution) can be quite sensitive to the amount of “Hartree−Fock” exchange included in the functional. Among all the functionals tested in this work, the BHandHLYP is the one that better compares to CCSD(T) results.</description><identifier>ISSN: 1089-5639</identifier><identifier>EISSN: 1520-5215</identifier><identifier>DOI: 10.1021/jp050626h</identifier><identifier>PMID: 16833899</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Anions ; Carboxylic Acids - chemistry ; Cations, Divalent ; Copper - chemistry ; Electrons ; Glycine - chemistry ; Isomerism ; Models, Molecular ; Oximes - chemistry ; Oxygen - chemistry ; Protons ; Thermodynamics</subject><ispartof>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2005-06, Vol.109 (25), p.5668-5676</ispartof><rights>Copyright © 2005 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a351t-cdb56704a63fe54d766543d140257d2ed7c4cf4dc33c3ecdfe73784b5cfaba683</citedby><cites>FETCH-LOGICAL-a351t-cdb56704a63fe54d766543d140257d2ed7c4cf4dc33c3ecdfe73784b5cfaba683</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16833899$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Georgieva, I</creatorcontrib><creatorcontrib>Trendafilova, N</creatorcontrib><creatorcontrib>Rodríguez-Santiago, L</creatorcontrib><creatorcontrib>Sodupe, M</creatorcontrib><title>Coordination Properties of the Oxime Analogue of Glycine to Cu(II)</title><title>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</title><addtitle>J. Phys. Chem. A</addtitle><description>The coordination of Cu2+ by glyoxilic acid oxime (gao) − the oxime analogue of glycine amino acid − and its deprotonated (gao- and gao2-) species has been studied with different density functional methods. Single-point calculations have also been carried out at the single- and double- (triple) excitation coupled-cluster (CCSD(T)) level of theory. The isomers studied involve coordination of Cu2+ to electron-rich sites (O,N) of neutral, anionic, and dianionic gao species in different conformations. In contrast to Cu2+−glycine, for which the ground-state structure is bidentate with the CO2 - terminus of zwitterionic glycine, for Cu2+−gao the most stable isomer shows monodentate binding of Cu2+ with the carbonylic oxygen of the neutral form. The most stable complexes of Cu2+ interacting with deprotonated gao species (gao- and gao2-) also take place through the carboxylic oxygens but in a bidentate manner. The results with different functionals show that, for these open shell (Cu2+−L) systems, the relative stability of complexes with different coordination environments (and so, different spin distribution) can be quite sensitive to the amount of “Hartree−Fock” exchange included in the functional. Among all the functionals tested in this work, the BHandHLYP is the one that better compares to CCSD(T) results.</description><subject>Anions</subject><subject>Carboxylic Acids - chemistry</subject><subject>Cations, Divalent</subject><subject>Copper - chemistry</subject><subject>Electrons</subject><subject>Glycine - chemistry</subject><subject>Isomerism</subject><subject>Models, Molecular</subject><subject>Oximes - chemistry</subject><subject>Oxygen - chemistry</subject><subject>Protons</subject><subject>Thermodynamics</subject><issn>1089-5639</issn><issn>1520-5215</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><recordid>eNptkFFPwjAQxxujEUUf_AJmLxp5mLbr2o1HWAQxRDDic9O1NxmOdbZbAt_eEQi--HSXu1_u_vkhdEPwI8EBeVpVmGEe8OUJuiAswD4LCDttexz3fcZpv4MunVthjAkNwnPUITymNO73L9AwMcbqvJR1bkpvbk0Fts7BeSbz6iV4s02-Bm9QysJ8NbCbjoutykvwauMlzcNk0rtCZ5ksHFwfahd9jp4XyYs_nY0nyWDqS8pI7SudMh7hUHKaAQt1xDkLqSYhDlikA9CRClUWakWpoqB0BhGN4jBlKpOpbAN30f3-bmXNTwOuFuvcKSgKWYJpnIgwiXBAaQv29qCyxjkLmahsvpZ2KwgWO2HiKKxlbw9Hm3QN-o88GGoBfw_krobNcS_tt-BtQCYW8w8xosPkff46FG8tf7fnpXJiZRrbqnP_PP4FbaiACQ</recordid><startdate>20050630</startdate><enddate>20050630</enddate><creator>Georgieva, I</creator><creator>Trendafilova, N</creator><creator>Rodríguez-Santiago, L</creator><creator>Sodupe, M</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20050630</creationdate><title>Coordination Properties of the Oxime Analogue of Glycine to Cu(II)</title><author>Georgieva, I ; Trendafilova, N ; Rodríguez-Santiago, L ; Sodupe, M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a351t-cdb56704a63fe54d766543d140257d2ed7c4cf4dc33c3ecdfe73784b5cfaba683</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Anions</topic><topic>Carboxylic Acids - chemistry</topic><topic>Cations, Divalent</topic><topic>Copper - chemistry</topic><topic>Electrons</topic><topic>Glycine - chemistry</topic><topic>Isomerism</topic><topic>Models, Molecular</topic><topic>Oximes - chemistry</topic><topic>Oxygen - chemistry</topic><topic>Protons</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Georgieva, I</creatorcontrib><creatorcontrib>Trendafilova, N</creatorcontrib><creatorcontrib>Rodríguez-Santiago, L</creatorcontrib><creatorcontrib>Sodupe, M</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Georgieva, I</au><au>Trendafilova, N</au><au>Rodríguez-Santiago, L</au><au>Sodupe, M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Coordination Properties of the Oxime Analogue of Glycine to Cu(II)</atitle><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</jtitle><addtitle>J. Phys. Chem. A</addtitle><date>2005-06-30</date><risdate>2005</risdate><volume>109</volume><issue>25</issue><spage>5668</spage><epage>5676</epage><pages>5668-5676</pages><issn>1089-5639</issn><eissn>1520-5215</eissn><abstract>The coordination of Cu2+ by glyoxilic acid oxime (gao) − the oxime analogue of glycine amino acid − and its deprotonated (gao- and gao2-) species has been studied with different density functional methods. Single-point calculations have also been carried out at the single- and double- (triple) excitation coupled-cluster (CCSD(T)) level of theory. The isomers studied involve coordination of Cu2+ to electron-rich sites (O,N) of neutral, anionic, and dianionic gao species in different conformations. In contrast to Cu2+−glycine, for which the ground-state structure is bidentate with the CO2 - terminus of zwitterionic glycine, for Cu2+−gao the most stable isomer shows monodentate binding of Cu2+ with the carbonylic oxygen of the neutral form. The most stable complexes of Cu2+ interacting with deprotonated gao species (gao- and gao2-) also take place through the carboxylic oxygens but in a bidentate manner. The results with different functionals show that, for these open shell (Cu2+−L) systems, the relative stability of complexes with different coordination environments (and so, different spin distribution) can be quite sensitive to the amount of “Hartree−Fock” exchange included in the functional. Among all the functionals tested in this work, the BHandHLYP is the one that better compares to CCSD(T) results.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>16833899</pmid><doi>10.1021/jp050626h</doi><tpages>9</tpages></addata></record> |
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subjects | Anions Carboxylic Acids - chemistry Cations, Divalent Copper - chemistry Electrons Glycine - chemistry Isomerism Models, Molecular Oximes - chemistry Oxygen - chemistry Protons Thermodynamics |
title | Coordination Properties of the Oxime Analogue of Glycine to Cu(II) |
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