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Characterization of two novel GBA mutations causing Gaucher disease that lead to aberrant RNA species by using functional splicing assays
The correct identification of disease‐causing mutations from the background of harmless nucleotide polymorphisms/substitutions has become a critical issue in the investigation of human genetic diseases. Here, we describe two novel disease‐causing splicing mutations in the glucocerebrosidase gene, g....
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Published in: | Human mutation 2006-01, Vol.27 (1), p.119-119 |
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description | The correct identification of disease‐causing mutations from the background of harmless nucleotide polymorphisms/substitutions has become a critical issue in the investigation of human genetic diseases. Here, we describe two novel disease‐causing splicing mutations in the glucocerebrosidase gene, g.4252C>G and g.4426A>G, that have been found in two patients affected by Gaucher disease. The g.4252C>G substitution occurred in intron 5 and was located 12 nucleotides upstream of exon 6 acceptor site whilst the g.4426A>G mutation was located within this exon, 12 nucleotides upstream of the donor site. An in silico analysis suggested that both mutations could have altered the splicing process of exon 6 by creating a novel acceptor and donor site, respectively. However, because the wild‐type acceptor and donor sites of exon 6 were not apparently affected, the severity of both mutations could not be established by simple sequence analysis alone. Nonetheless, the use of minigene functional assays to complement transcript analysis of patient fibroblasts shows that both mutations cause the almost complete switch of splice site usage from the wild‐type to the newly‐created ones, thus providing a functional explanation for the appearance of disease. © 2005 Wiley‐Liss, Inc. |
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Here, we describe two novel disease‐causing splicing mutations in the glucocerebrosidase gene, g.4252C>G and g.4426A>G, that have been found in two patients affected by Gaucher disease. The g.4252C>G substitution occurred in intron 5 and was located 12 nucleotides upstream of exon 6 acceptor site whilst the g.4426A>G mutation was located within this exon, 12 nucleotides upstream of the donor site. An in silico analysis suggested that both mutations could have altered the splicing process of exon 6 by creating a novel acceptor and donor site, respectively. However, because the wild‐type acceptor and donor sites of exon 6 were not apparently affected, the severity of both mutations could not be established by simple sequence analysis alone. Nonetheless, the use of minigene functional assays to complement transcript analysis of patient fibroblasts shows that both mutations cause the almost complete switch of splice site usage from the wild‐type to the newly‐created ones, thus providing a functional explanation for the appearance of disease. © 2005 Wiley‐Liss, Inc.</description><identifier>ISSN: 1059-7794</identifier><identifier>EISSN: 1098-1004</identifier><identifier>DOI: 10.1002/humu.9391</identifier><identifier>PMID: 16329099</identifier><language>eng</language><publisher>Hoboken: Wiley Subscription Services, Inc., A Wiley Company</publisher><subject>Aged ; Alternative Splicing - genetics ; Disease ; DNA Mutational Analysis ; Enzymes ; Exons - genetics ; Female ; Fibroblasts - metabolism ; functional splicing assay ; Gaucher disease ; Gaucher Disease - enzymology ; Gaucher Disease - genetics ; GBA gene ; Genetic disorders ; Glucosylceramidase - genetics ; HeLa Cells ; Humans ; Male ; Middle Aged ; Mutation ; Mutation - genetics ; Nervous system ; Patients ; RNA Splice Sites - genetics ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; splicing mutations ; Thrombocytopenia ; Tumor Cells, Cultured</subject><ispartof>Human mutation, 2006-01, Vol.27 (1), p.119-119</ispartof><rights>2005 Wiley‐Liss, Inc.</rights><rights>2005 Wiley-Liss, Inc.</rights><rights>Copyright © 2006 Wiley-Liss, Inc., A Wiley Company</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3691-450f78cab855e01702754d2f336de996c2920c8feb93b584d09b37b004d812333</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/197282587/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/197282587?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,25753,27924,27925,37012,37013,44590,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16329099$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Dominissini, Silvia</creatorcontrib><creatorcontrib>Buratti, Emanuele</creatorcontrib><creatorcontrib>Bembi, Bruno</creatorcontrib><creatorcontrib>Baralle, Marco</creatorcontrib><creatorcontrib>Pittis, Maria Gabriela</creatorcontrib><title>Characterization of two novel GBA mutations causing Gaucher disease that lead to aberrant RNA species by using functional splicing assays</title><title>Human mutation</title><addtitle>Hum. Mutat</addtitle><description>The correct identification of disease‐causing mutations from the background of harmless nucleotide polymorphisms/substitutions has become a critical issue in the investigation of human genetic diseases. Here, we describe two novel disease‐causing splicing mutations in the glucocerebrosidase gene, g.4252C>G and g.4426A>G, that have been found in two patients affected by Gaucher disease. The g.4252C>G substitution occurred in intron 5 and was located 12 nucleotides upstream of exon 6 acceptor site whilst the g.4426A>G mutation was located within this exon, 12 nucleotides upstream of the donor site. An in silico analysis suggested that both mutations could have altered the splicing process of exon 6 by creating a novel acceptor and donor site, respectively. However, because the wild‐type acceptor and donor sites of exon 6 were not apparently affected, the severity of both mutations could not be established by simple sequence analysis alone. Nonetheless, the use of minigene functional assays to complement transcript analysis of patient fibroblasts shows that both mutations cause the almost complete switch of splice site usage from the wild‐type to the newly‐created ones, thus providing a functional explanation for the appearance of disease. © 2005 Wiley‐Liss, Inc.</description><subject>Aged</subject><subject>Alternative Splicing - genetics</subject><subject>Disease</subject><subject>DNA Mutational Analysis</subject><subject>Enzymes</subject><subject>Exons - genetics</subject><subject>Female</subject><subject>Fibroblasts - metabolism</subject><subject>functional splicing assay</subject><subject>Gaucher disease</subject><subject>Gaucher Disease - enzymology</subject><subject>Gaucher Disease - genetics</subject><subject>GBA gene</subject><subject>Genetic disorders</subject><subject>Glucosylceramidase - genetics</subject><subject>HeLa Cells</subject><subject>Humans</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Mutation</subject><subject>Mutation - genetics</subject><subject>Nervous system</subject><subject>Patients</subject><subject>RNA Splice Sites - genetics</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><subject>splicing mutations</subject><subject>Thrombocytopenia</subject><subject>Tumor Cells, Cultured</subject><issn>1059-7794</issn><issn>1098-1004</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNqFkUtv1DAUhSMEoqWw4A8giwUSi7R-JLG9nE5hBrUUCRhYWo5zw7jkMfhBGf4B_xqHjEBCQqxs3fudI91zsuwxwacEY3q2jX08lUySO9kxwVLkaVrcnf6lzDmXxVH2wPsbjLEoS3Y_OyIVoxJLeZz9WG610yaAs991sOOAxhaF2xEN41fo0Op8gfoYfm08Mjp6O3xCKx3NFhxqrAftAYWtDqgD3aAwIl2Dc3oI6O31AvkdGAse1Xs0S9s4mMlMd2nXWTPNtPd67x9m91rdeXh0eE-yzcsX75fr_OrN6tVycZUbVkmSFyVuuTC6TqcAJhxTXhYNbRmrGpCyMlRSbEQLtWR1KYoGy5rxOgXSCEIZYyfZs9l358YvEXxQvfUGuk4PMEavkmMKKiX0P5DwglPKRQKf_gXejNGlExMjORW0FDxBz2fIuNF7B63aOdtrt1cEq6lFNbWophYT--RgGOsemj_kobYEnM3Are1g_28ntd683hws81lhfYBvvxXafVYVZ7xUH69X6l11eXnxgV6oNfsJghO2wA</recordid><startdate>200601</startdate><enddate>200601</enddate><creator>Dominissini, Silvia</creator><creator>Buratti, Emanuele</creator><creator>Bembi, Bruno</creator><creator>Baralle, Marco</creator><creator>Pittis, Maria Gabriela</creator><general>Wiley Subscription Services, Inc., A Wiley Company</general><general>Hindawi Limited</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7TM</scope><scope>7X8</scope></search><sort><creationdate>200601</creationdate><title>Characterization of two novel GBA mutations causing Gaucher disease that lead to aberrant RNA species by using functional splicing assays</title><author>Dominissini, Silvia ; 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Mutat</addtitle><date>2006-01</date><risdate>2006</risdate><volume>27</volume><issue>1</issue><spage>119</spage><epage>119</epage><pages>119-119</pages><issn>1059-7794</issn><eissn>1098-1004</eissn><abstract>The correct identification of disease‐causing mutations from the background of harmless nucleotide polymorphisms/substitutions has become a critical issue in the investigation of human genetic diseases. Here, we describe two novel disease‐causing splicing mutations in the glucocerebrosidase gene, g.4252C>G and g.4426A>G, that have been found in two patients affected by Gaucher disease. The g.4252C>G substitution occurred in intron 5 and was located 12 nucleotides upstream of exon 6 acceptor site whilst the g.4426A>G mutation was located within this exon, 12 nucleotides upstream of the donor site. An in silico analysis suggested that both mutations could have altered the splicing process of exon 6 by creating a novel acceptor and donor site, respectively. However, because the wild‐type acceptor and donor sites of exon 6 were not apparently affected, the severity of both mutations could not be established by simple sequence analysis alone. Nonetheless, the use of minigene functional assays to complement transcript analysis of patient fibroblasts shows that both mutations cause the almost complete switch of splice site usage from the wild‐type to the newly‐created ones, thus providing a functional explanation for the appearance of disease. © 2005 Wiley‐Liss, Inc.</abstract><cop>Hoboken</cop><pub>Wiley Subscription Services, Inc., A Wiley Company</pub><pmid>16329099</pmid><doi>10.1002/humu.9391</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Aged Alternative Splicing - genetics Disease DNA Mutational Analysis Enzymes Exons - genetics Female Fibroblasts - metabolism functional splicing assay Gaucher disease Gaucher Disease - enzymology Gaucher Disease - genetics GBA gene Genetic disorders Glucosylceramidase - genetics HeLa Cells Humans Male Middle Aged Mutation Mutation - genetics Nervous system Patients RNA Splice Sites - genetics RNA, Messenger - genetics RNA, Messenger - metabolism splicing mutations Thrombocytopenia Tumor Cells, Cultured |
title | Characterization of two novel GBA mutations causing Gaucher disease that lead to aberrant RNA species by using functional splicing assays |
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