Conformational flexibility of a model protein upon immobilization on self-assembled monolayers

• Published in: Biotechnology and bioengineering 2008-05, Vol.100 (1), p.19-27
• Main Authors: Bigdeli, Saharnaz, Talasaz, AmirAli H, Ståhl, Patrik, Persson, Henrik H.J, Ronaghi, Mostafa, Davis, Ronald W, Nemat-Gorgani, Mohsen
• Format: Article
• Language: English
• Subjects: Adsorption; allosteric effectors; Animals; Binding Sites; Biochemistry; Biological and medical sciences; Biotechnology; Cattle; Coated Materials, Biocompatible - chemistry; Computer Simulation; conformational flexibility; Enzyme Activation; Enzyme Stability; Enzymes; Enzymes, Immobilized - chemistry; Fundamental and applied biological sciences. Psychology; General aspects; glutamate dehydrogenase; Glutamate Dehydrogenase - chemistry; Glutamate Dehydrogenase - ultrastructure; Gold; Gold - chemistry; immobilization; Immobilization techniques; Methods. Procedures. Technologies; Models, Chemical; Models, Molecular; orientation; Protein Binding; Protein Conformation; Proteins; self-assembled monolayer
• ISSN: 0006-3592; 1097-0290
• DOI: 10.1002/bit.21724

The present study reports on the retention of conformational flexibility of a model allosteric protein upon immobilization on self-assembled monolayers (SAMs) on gold. Organothiolated SAMs of different compositions were utilized for adsorptive and covalent attachment of bovine liver glutamate dehydrogenase (GDH), a well-characterized allosteric enzyme. Sensitive fluorimetric assays were developed to determine immobilization capacity, specific activity, and allosteric properties of the immobilized preparations as well as the potential for repeated use and continuous catalytic transformations. The allosteric response of the free and immobilized forms towards ADP, L-leucine and high concentrations of NAD⁺, some of the well-known activators for this enzyme, were determined and compared. The enzyme immobilized by adsorption or chemical binding responded similarly to the activators with a greater degree of activation, as compared to the free form. Also loss of activity involving the two immobilization procedures were similar, suggesting that residues essential for catalytic activity or allosteric properties of GDH remained unchanged in the course of chemical modification. A recently established method was used to predict GDH orientation upon immobilization, which was found to explain some of the experimental results presented. The general significance of these observations in connection with retention of native properties of protein structures upon immobilization on SAMs is discussed.