A differential medium for the isolation and rapid identification of a plant soft rot pathogen, Erwinia chrysanthemi

• Published in: Journal of microbiological methods 2006-02, Vol.64 (2), p.200-206
• Main Authors: Lee, Yung-An, Yu, Cheng-Pin
• Format: Article
• Language: English
• Subjects: Bacteriology; Biological and medical sciences; Culture Media - chemistry; Culture Media - metabolism; Differential medium; Erwinia chrysanthemi; Fundamental and applied biological sciences. Psychology; Genetics; Glycerol; Indigoidine; Microbiology; NGM medium; Orchidaceae; Orchidaceae - microbiology; Pathogenicity, virulence, toxins, bacteriocins, pyrogens, host-bacteria relations, miscellaneous strains; Pectobacterium chrysanthemi - classification; Pectobacterium chrysanthemi - isolation & purification; Pectobacterium chrysanthemi - metabolism; Piperidones - metabolism; Plant Diseases - microbiology; Sensitivity and Specificity; Species Specificity; Taiwan
• ISSN: 0167-7012; 1872-8359
• DOI: 10.1016/j.mimet.2005.04.031

A medium was developed for the isolation and differentiation of Erwinia chrysanthemi from other Erwinia spp. based on the production of blue-pigmented indigoidine. The medium, named NGM, consists of nutrient agar supplemented with 1% glycerol, that induces pigment production, and 2 mM MnCl 2·4H 2O, that further enhances color development. More than fifty E. chrysanthemi strains from six different plant hosts were tested. All tested strains of E. chrysanthemi grew well on the NGM medium, developing dark brownish to blue colonies easily distinguishable from other Erwinia spp. The results indicate that pigment production on the NGM medium is a very stable property and can be used as a phenotypic property to differentiate E. chrysanthemi from other Erwinia spp. In addition, a specific oligonucleotide primer set was designed for the detection of indC, which is involved in indigoidine biosynthesis. All E. chrysanthemi strains tested contained indC as determined by PCR amplification. No amplification was observed with other Erwinia spp. Thus, pigment production of E. chrysanthemi on the NGM medium is consistent with the existence of indC. The NGM medium was used to isolate and identify the causal agent of soft rot lesions of diseased Phalaenopsis orchids from three orchid cultivation areas in Taiwan. The causal agents of Phalaenopsis soft rot were all identified as E. chrysanthemi. The results indicate that the NGM medium is efficient in isolation and identification of E. chrysanthemi from plants with soft rot symptoms and can also be used for epidemiological studies.