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The measurement of toluene dioxygenase activity in biofilm culture of Pseudomonas putida F1
Toluene dioxygenase (Tod) enzyme activity can be measured by the conversion of indole to indigo. Indigo is measured spectrophotometrically at 600 nm. However, this method is inadequate to measure the whole-cell enzyme activity when interference by suspended biomass is present. Indoxyl is a highly fl...
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Published in: | Journal of microbiological methods 2000-04, Vol.40 (2), p.181-191 |
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creator | Woo, Hae-jin Sanseverino, John Cox, Chris D. Robinson, Kevin G. Sayler, Gary S. |
description | Toluene dioxygenase (Tod) enzyme activity can be measured by the conversion of indole to indigo. Indigo is measured spectrophotometrically at 600 nm. However, this method is inadequate to measure the whole-cell enzyme activity when interference by suspended biomass is present. Indoxyl is a highly fluorescent intermediate in the conversion of indole to indigo by Tod. A fluorescence-based assay was developed and applied to monitor Tod activity in whole cells of Pseudomonas putida F1 biofilm from a continuously operated biofilter. Suspended growth studies with pure cultures indicated that indoxyl, as measured by fluorescence, correlated with indigo production (r2=0.89) as measured by spectrophotometry. Whole-cell enzyme activity was followed during growth on a minimal medium containing toluene. The maximum normalized whole cell enzyme activity of 19±1.5×10−4 mg indigo (mg protein)−1 min−1 was reached during early stationary phase. P. putida F1 cells from a biofilm grown on vapor phase toluene had a normalized whole-cell enzyme activity of 5.0±0.2×10−4 mg indigo (mg protein)−1 min−1. The half-life of whole-cell enzyme activity was estimated to be between 5·5 and 8 h in both suspended and biofilm growth conditions. |
doi_str_mv | 10.1016/S0167-7012(00)00123-8 |
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Indigo is measured spectrophotometrically at 600 nm. However, this method is inadequate to measure the whole-cell enzyme activity when interference by suspended biomass is present. Indoxyl is a highly fluorescent intermediate in the conversion of indole to indigo by Tod. A fluorescence-based assay was developed and applied to monitor Tod activity in whole cells of Pseudomonas putida F1 biofilm from a continuously operated biofilter. Suspended growth studies with pure cultures indicated that indoxyl, as measured by fluorescence, correlated with indigo production (r2=0.89) as measured by spectrophotometry. Whole-cell enzyme activity was followed during growth on a minimal medium containing toluene. The maximum normalized whole cell enzyme activity of 19±1.5×10−4 mg indigo (mg protein)−1 min−1 was reached during early stationary phase. P. putida F1 cells from a biofilm grown on vapor phase toluene had a normalized whole-cell enzyme activity of 5.0±0.2×10−4 mg indigo (mg protein)−1 min−1. The half-life of whole-cell enzyme activity was estimated to be between 5·5 and 8 h in both suspended and biofilm growth conditions.</description><identifier>ISSN: 0167-7012</identifier><identifier>EISSN: 1872-8359</identifier><identifier>DOI: 10.1016/S0167-7012(00)00123-8</identifier><identifier>PMID: 10699674</identifier><identifier>CODEN: JMIMDQ</identifier><language>eng</language><publisher>Shannon: Elsevier B.V</publisher><subject>Bacteriological methods and techniques used in bacteriology ; Bacteriology ; Biofilms ; Biological and medical sciences ; Fundamental and applied biological sciences. Psychology ; indigo ; indole ; Indoles ; Microbiology ; NAD - metabolism ; Oxygenases - metabolism ; Pseudomonas putida ; Pseudomonas putida - enzymology ; Pseudomonas putida F1 ; Space life sciences ; Spectrometry, Fluorescence - methods ; TCE cometabolism ; Toluene dioxygenase</subject><ispartof>Journal of microbiological methods, 2000-04, Vol.40 (2), p.181-191</ispartof><rights>2000 Elsevier Science B.V.</rights><rights>2000 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c539t-b3229850f9d99be64f82f8ca49ed033e5abb5c3f43d3a66f521ec6ae0a532e7e3</citedby><cites>FETCH-LOGICAL-c539t-b3229850f9d99be64f82f8ca49ed033e5abb5c3f43d3a66f521ec6ae0a532e7e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=1325650$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10699674$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Woo, Hae-jin</creatorcontrib><creatorcontrib>Sanseverino, John</creatorcontrib><creatorcontrib>Cox, Chris D.</creatorcontrib><creatorcontrib>Robinson, Kevin G.</creatorcontrib><creatorcontrib>Sayler, Gary S.</creatorcontrib><title>The measurement of toluene dioxygenase activity in biofilm culture of Pseudomonas putida F1</title><title>Journal of microbiological methods</title><addtitle>J Microbiol Methods</addtitle><description>Toluene dioxygenase (Tod) enzyme activity can be measured by the conversion of indole to indigo. Indigo is measured spectrophotometrically at 600 nm. However, this method is inadequate to measure the whole-cell enzyme activity when interference by suspended biomass is present. Indoxyl is a highly fluorescent intermediate in the conversion of indole to indigo by Tod. A fluorescence-based assay was developed and applied to monitor Tod activity in whole cells of Pseudomonas putida F1 biofilm from a continuously operated biofilter. Suspended growth studies with pure cultures indicated that indoxyl, as measured by fluorescence, correlated with indigo production (r2=0.89) as measured by spectrophotometry. Whole-cell enzyme activity was followed during growth on a minimal medium containing toluene. The maximum normalized whole cell enzyme activity of 19±1.5×10−4 mg indigo (mg protein)−1 min−1 was reached during early stationary phase. P. putida F1 cells from a biofilm grown on vapor phase toluene had a normalized whole-cell enzyme activity of 5.0±0.2×10−4 mg indigo (mg protein)−1 min−1. The half-life of whole-cell enzyme activity was estimated to be between 5·5 and 8 h in both suspended and biofilm growth conditions.</description><subject>Bacteriological methods and techniques used in bacteriology</subject><subject>Bacteriology</subject><subject>Biofilms</subject><subject>Biological and medical sciences</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>indigo</subject><subject>indole</subject><subject>Indoles</subject><subject>Microbiology</subject><subject>NAD - metabolism</subject><subject>Oxygenases - metabolism</subject><subject>Pseudomonas putida</subject><subject>Pseudomonas putida - enzymology</subject><subject>Pseudomonas putida F1</subject><subject>Space life sciences</subject><subject>Spectrometry, Fluorescence - methods</subject><subject>TCE cometabolism</subject><subject>Toluene dioxygenase</subject><issn>0167-7012</issn><issn>1872-8359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><recordid>eNqFkE1v1DAQhi0EarelP4HKB4TKIeCP2IlPFaooIFUCifbUg-XYY-oqibe2U7H_Hm93Bdx6mffyvDOjB6E3lHyghMqPP-vomo5QdkbIe1KTN_0LtKJ9x5qeC_USrf4ih-go5_sKCd72B-iQEqmU7NoVur2-AzyByUuCCeaCo8cljgvMgF2Ivze_YDYZsLElPIaywWHGQ4g-jBO2y1hqbVv5kWFxcYqVxeulBGfwJX2NXnkzZjjZ5zG6ufx8ffG1ufr-5dvFp6vGCq5KM3DGVC-IV06pAWTre-Z7a1oFjnAOwgyDsNy33HEjpReMgpUGiBGcQQf8GL3b7V2n-LBALnoK2cI4mhniknVHVEskk8-CtGsVU4pUUOxAm2LOCbxepzCZtNGU6K1-_aRfb91qQvSTft3X3un-wDJM4P5r7XxX4O0eMNma0Scz25D_cZwJKbb3z3cYVG2PAZLONsBswYUEtmgXwzOf_AG-aqH-</recordid><startdate>20000401</startdate><enddate>20000401</enddate><creator>Woo, Hae-jin</creator><creator>Sanseverino, John</creator><creator>Cox, Chris D.</creator><creator>Robinson, Kevin G.</creator><creator>Sayler, Gary S.</creator><general>Elsevier B.V</general><general>Elsevier Science</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20000401</creationdate><title>The measurement of toluene dioxygenase activity in biofilm culture of Pseudomonas putida F1</title><author>Woo, Hae-jin ; Sanseverino, John ; Cox, Chris D. ; Robinson, Kevin G. ; Sayler, Gary S.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c539t-b3229850f9d99be64f82f8ca49ed033e5abb5c3f43d3a66f521ec6ae0a532e7e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>Bacteriological methods and techniques used in bacteriology</topic><topic>Bacteriology</topic><topic>Biofilms</topic><topic>Biological and medical sciences</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>indigo</topic><topic>indole</topic><topic>Indoles</topic><topic>Microbiology</topic><topic>NAD - metabolism</topic><topic>Oxygenases - metabolism</topic><topic>Pseudomonas putida</topic><topic>Pseudomonas putida - enzymology</topic><topic>Pseudomonas putida F1</topic><topic>Space life sciences</topic><topic>Spectrometry, Fluorescence - methods</topic><topic>TCE cometabolism</topic><topic>Toluene dioxygenase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Woo, Hae-jin</creatorcontrib><creatorcontrib>Sanseverino, John</creatorcontrib><creatorcontrib>Cox, Chris D.</creatorcontrib><creatorcontrib>Robinson, Kevin G.</creatorcontrib><creatorcontrib>Sayler, Gary S.</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of microbiological methods</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Woo, Hae-jin</au><au>Sanseverino, John</au><au>Cox, Chris D.</au><au>Robinson, Kevin G.</au><au>Sayler, Gary S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The measurement of toluene dioxygenase activity in biofilm culture of Pseudomonas putida F1</atitle><jtitle>Journal of microbiological methods</jtitle><addtitle>J Microbiol Methods</addtitle><date>2000-04-01</date><risdate>2000</risdate><volume>40</volume><issue>2</issue><spage>181</spage><epage>191</epage><pages>181-191</pages><issn>0167-7012</issn><eissn>1872-8359</eissn><coden>JMIMDQ</coden><abstract>Toluene dioxygenase (Tod) enzyme activity can be measured by the conversion of indole to indigo. Indigo is measured spectrophotometrically at 600 nm. However, this method is inadequate to measure the whole-cell enzyme activity when interference by suspended biomass is present. Indoxyl is a highly fluorescent intermediate in the conversion of indole to indigo by Tod. A fluorescence-based assay was developed and applied to monitor Tod activity in whole cells of Pseudomonas putida F1 biofilm from a continuously operated biofilter. Suspended growth studies with pure cultures indicated that indoxyl, as measured by fluorescence, correlated with indigo production (r2=0.89) as measured by spectrophotometry. Whole-cell enzyme activity was followed during growth on a minimal medium containing toluene. The maximum normalized whole cell enzyme activity of 19±1.5×10−4 mg indigo (mg protein)−1 min−1 was reached during early stationary phase. P. putida F1 cells from a biofilm grown on vapor phase toluene had a normalized whole-cell enzyme activity of 5.0±0.2×10−4 mg indigo (mg protein)−1 min−1. The half-life of whole-cell enzyme activity was estimated to be between 5·5 and 8 h in both suspended and biofilm growth conditions.</abstract><cop>Shannon</cop><pub>Elsevier B.V</pub><pmid>10699674</pmid><doi>10.1016/S0167-7012(00)00123-8</doi><tpages>11</tpages></addata></record> |
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subjects | Bacteriological methods and techniques used in bacteriology Bacteriology Biofilms Biological and medical sciences Fundamental and applied biological sciences. Psychology indigo indole Indoles Microbiology NAD - metabolism Oxygenases - metabolism Pseudomonas putida Pseudomonas putida - enzymology Pseudomonas putida F1 Space life sciences Spectrometry, Fluorescence - methods TCE cometabolism Toluene dioxygenase |
title | The measurement of toluene dioxygenase activity in biofilm culture of Pseudomonas putida F1 |
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