An automated annotation tool for genomic DNA sequences using GeneScan and BLAST

Genomic sequence data are often available well before the annotated sequence is published. We present a method for analysis of genomic DNA to identify coding sequences using the GeneScan algorithm and characterize these resultant sequences by BLAST. The routines are used to develop a system for auto...

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Bibliographic Details
Published in:Journal of genetics 2001-04, Vol.80 (1), p.9-16
Main Authors: Lynn, A M, Jain, C K, Kosalai, K, Barman, P, Thakur, N, Batra, H, Bhattacharya, A
Format: Article
Language:English
Subjects:
Algorithms
Animals
Deoxyribonucleic acid
DNA
Eukaryotic Cells
Evolution, Molecular
Fourier Analysis
Genetics, Microbial
Genomic analysis
Genomics
Nucleotide sequence
Plasmodium falciparum - genetics
Sequence Analysis, DNA
Software
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Summary:Genomic sequence data are often available well before the annotated sequence is published. We present a method for analysis of genomic DNA to identify coding sequences using the GeneScan algorithm and characterize these resultant sequences by BLAST. The routines are used to develop a system for automated annotation of genome DNA sequences.
ISSN:0022-1333
0973-7731
DOI:10.1007/BF02811413