MetaGeneAlyse: analysis of integrated transcriptional and metabolite data

New techniques in sample preparation allow high throughput analysis of samples on the transcriptional as well as on the metabolic level. We present a service accessible via the web that allows the analysis of integrated data sets that combine gene-expression data and metabolic data. After uploading,...

Full description

Saved in:
Bibliographic Details
Published in:Bioinformatics 2003-11, Vol.19 (17), p.2332-2333
Main Authors: Daub, Carsten O., Kloska, Sebastian, Selbig, Joachim
Format: Article
Language:English
Subjects:
Algorithms
Biological and medical sciences
Fundamental and applied biological sciences. Psychology
Gene Expression Profiling - methods
Gene Expression Regulation - physiology
General aspects
Information Storage and Retrieval - methods
Internet
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Metabolism - physiology
Signal Transduction - physiology
Software
Systems Integration
Transcription, Genetic - physiology
User-Computer Interface
Citations: Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c478t-6bd0a61711e996438c26fcb7d08e836696815bed230c8404a655c119b671c473
cites
container_end_page 2333
container_issue 17
container_start_page 2332
container_title Bioinformatics
container_volume 19
creator Daub, Carsten O.
Kloska, Sebastian
Selbig, Joachim
description New techniques in sample preparation allow high throughput analysis of samples on the transcriptional as well as on the metabolic level. We present a service accessible via the web that allows the analysis of integrated data sets that combine gene-expression data and metabolic data. After uploading, data sets can be normalized, clustered by various methods and results can be graphically visualized. All calculations are carried out on a server, so even time- and memory-consuming analyses can be done independently of the performance of the client. Availability: The service is accessible via web-interface at http://metagenealyse.mpimp-golm.mpg.de/
doi_str_mv 10.1093/bioinformatics/btg321
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_71394284</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>71394284</sourcerecordid><originalsourceid>FETCH-LOGICAL-c478t-6bd0a61711e996438c26fcb7d08e836696815bed230c8404a655c119b671c473</originalsourceid><addsrcrecordid>eNqF0UtLxDAQAOAgiu-foBRBb9WkeTT1tizqCq6C7EG8hDSdSrRt1iQL-u_NsouiF08ZmG8myQxCRwSfE1zRi9o6O7TO9zpaEy7q-EILsoF2CRM4LzCvNlNMRZkziekO2gvhFWNOGGPbaCchikWJd9HtFKK-gQFG3WeAy0wPOgU2ZK7N7BDhxesITRa9HoLxdh6tSyKxJutTZe06GyFrdNQHaKvVXYDD9bmPZtdXs_Ekv3u4uR2P7nLDShlzUTdYC1ISAlUlGJWmEK2pywZLkFSISkjCa2gKio1kmGnBuSGkqkVJUge6j85WbefevS8gRNXbYKDr9ABuEVRJaMUKyf6FRMo0BcoTPPkDX93Cp18mU0mRkFxey1fIeBeCh1bNve21_1QEq-VC1O-FqNVCUt3xuvmi7qH5qVpvIIHTNdDB6K5NgzY2_DhOCSvE8gH5ytkQ4eM7r_2bStmSq8nTs3p8ms7G9_djxekXB7SnXg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>198646387</pqid></control><display><type>article</type><title>MetaGeneAlyse: analysis of integrated transcriptional and metabolite data</title><source>Open Access: Oxford University Press Open Journals</source><creator>Daub, Carsten O. ; Kloska, Sebastian ; Selbig, Joachim</creator><creatorcontrib>Daub, Carsten O. ; Kloska, Sebastian ; Selbig, Joachim</creatorcontrib><description>New techniques in sample preparation allow high throughput analysis of samples on the transcriptional as well as on the metabolic level. We present a service accessible via the web that allows the analysis of integrated data sets that combine gene-expression data and metabolic data. After uploading, data sets can be normalized, clustered by various methods and results can be graphically visualized. All calculations are carried out on a server, so even time- and memory-consuming analyses can be done independently of the performance of the client. Availability: The service is accessible via web-interface at http://metagenealyse.mpimp-golm.mpg.de/</description><identifier>ISSN: 1367-4803</identifier><identifier>EISSN: 1460-2059</identifier><identifier>EISSN: 1367-4811</identifier><identifier>DOI: 10.1093/bioinformatics/btg321</identifier><identifier>PMID: 14630670</identifier><identifier>CODEN: BOINFP</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Algorithms ; Biological and medical sciences ; Fundamental and applied biological sciences. Psychology ; Gene Expression Profiling - methods ; Gene Expression Regulation - physiology ; General aspects ; Information Storage and Retrieval - methods ; Internet ; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) ; Metabolism - physiology ; Signal Transduction - physiology ; Software ; Systems Integration ; Transcription, Genetic - physiology ; User-Computer Interface</subject><ispartof>Bioinformatics, 2003-11, Vol.19 (17), p.2332-2333</ispartof><rights>2004 INIST-CNRS</rights><rights>Copyright Oxford University Press(England) Nov 22, 2003</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c478t-6bd0a61711e996438c26fcb7d08e836696815bed230c8404a655c119b671c473</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=15314267$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14630670$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Daub, Carsten O.</creatorcontrib><creatorcontrib>Kloska, Sebastian</creatorcontrib><creatorcontrib>Selbig, Joachim</creatorcontrib><title>MetaGeneAlyse: analysis of integrated transcriptional and metabolite data</title><title>Bioinformatics</title><addtitle>Bioinformatics</addtitle><description>New techniques in sample preparation allow high throughput analysis of samples on the transcriptional as well as on the metabolic level. We present a service accessible via the web that allows the analysis of integrated data sets that combine gene-expression data and metabolic data. After uploading, data sets can be normalized, clustered by various methods and results can be graphically visualized. All calculations are carried out on a server, so even time- and memory-consuming analyses can be done independently of the performance of the client. Availability: The service is accessible via web-interface at http://metagenealyse.mpimp-golm.mpg.de/</description><subject>Algorithms</subject><subject>Biological and medical sciences</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Expression Profiling - methods</subject><subject>Gene Expression Regulation - physiology</subject><subject>General aspects</subject><subject>Information Storage and Retrieval - methods</subject><subject>Internet</subject><subject>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</subject><subject>Metabolism - physiology</subject><subject>Signal Transduction - physiology</subject><subject>Software</subject><subject>Systems Integration</subject><subject>Transcription, Genetic - physiology</subject><subject>User-Computer Interface</subject><issn>1367-4803</issn><issn>1460-2059</issn><issn>1367-4811</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><recordid>eNqF0UtLxDAQAOAgiu-foBRBb9WkeTT1tizqCq6C7EG8hDSdSrRt1iQL-u_NsouiF08ZmG8myQxCRwSfE1zRi9o6O7TO9zpaEy7q-EILsoF2CRM4LzCvNlNMRZkziekO2gvhFWNOGGPbaCchikWJd9HtFKK-gQFG3WeAy0wPOgU2ZK7N7BDhxesITRa9HoLxdh6tSyKxJutTZe06GyFrdNQHaKvVXYDD9bmPZtdXs_Ekv3u4uR2P7nLDShlzUTdYC1ISAlUlGJWmEK2pywZLkFSISkjCa2gKio1kmGnBuSGkqkVJUge6j85WbefevS8gRNXbYKDr9ABuEVRJaMUKyf6FRMo0BcoTPPkDX93Cp18mU0mRkFxey1fIeBeCh1bNve21_1QEq-VC1O-FqNVCUt3xuvmi7qH5qVpvIIHTNdDB6K5NgzY2_DhOCSvE8gH5ytkQ4eM7r_2bStmSq8nTs3p8ms7G9_djxekXB7SnXg</recordid><startdate>20031122</startdate><enddate>20031122</enddate><creator>Daub, Carsten O.</creator><creator>Kloska, Sebastian</creator><creator>Selbig, Joachim</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7TM</scope><scope>7TO</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>JG9</scope><scope>JQ2</scope><scope>K9.</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20031122</creationdate><title>MetaGeneAlyse: analysis of integrated transcriptional and metabolite data</title><author>Daub, Carsten O. ; Kloska, Sebastian ; Selbig, Joachim</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c478t-6bd0a61711e996438c26fcb7d08e836696815bed230c8404a655c119b671c473</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Algorithms</topic><topic>Biological and medical sciences</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Expression Profiling - methods</topic><topic>Gene Expression Regulation - physiology</topic><topic>General aspects</topic><topic>Information Storage and Retrieval - methods</topic><topic>Internet</topic><topic>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</topic><topic>Metabolism - physiology</topic><topic>Signal Transduction - physiology</topic><topic>Software</topic><topic>Systems Integration</topic><topic>Transcription, Genetic - physiology</topic><topic>User-Computer Interface</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Daub, Carsten O.</creatorcontrib><creatorcontrib>Kloska, Sebastian</creatorcontrib><creatorcontrib>Selbig, Joachim</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics &amp; Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical &amp; Transportation Engineering Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology &amp; Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts – Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Daub, Carsten O.</au><au>Kloska, Sebastian</au><au>Selbig, Joachim</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>MetaGeneAlyse: analysis of integrated transcriptional and metabolite data</atitle><jtitle>Bioinformatics</jtitle><addtitle>Bioinformatics</addtitle><date>2003-11-22</date><risdate>2003</risdate><volume>19</volume><issue>17</issue><spage>2332</spage><epage>2333</epage><pages>2332-2333</pages><issn>1367-4803</issn><eissn>1460-2059</eissn><eissn>1367-4811</eissn><coden>BOINFP</coden><abstract>New techniques in sample preparation allow high throughput analysis of samples on the transcriptional as well as on the metabolic level. We present a service accessible via the web that allows the analysis of integrated data sets that combine gene-expression data and metabolic data. After uploading, data sets can be normalized, clustered by various methods and results can be graphically visualized. All calculations are carried out on a server, so even time- and memory-consuming analyses can be done independently of the performance of the client. Availability: The service is accessible via web-interface at http://metagenealyse.mpimp-golm.mpg.de/</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>14630670</pmid><doi>10.1093/bioinformatics/btg321</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1367-4803
ispartof Bioinformatics, 2003-11, Vol.19 (17), p.2332-2333
issn 1367-4803
1460-2059
1367-4811
language eng
recordid cdi_proquest_miscellaneous_71394284
source Open Access: Oxford University Press Open Journals
subjects Algorithms
Biological and medical sciences
Fundamental and applied biological sciences. Psychology
Gene Expression Profiling - methods
Gene Expression Regulation - physiology
General aspects
Information Storage and Retrieval - methods
Internet
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Metabolism - physiology
Signal Transduction - physiology
Software
Systems Integration
Transcription, Genetic - physiology
User-Computer Interface
title MetaGeneAlyse: analysis of integrated transcriptional and metabolite data
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-27T02%3A50%3A52IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=MetaGeneAlyse:%20analysis%20of%20integrated%20transcriptional%20and%20metabolite%20data&rft.jtitle=Bioinformatics&rft.au=Daub,%20Carsten%20O.&rft.date=2003-11-22&rft.volume=19&rft.issue=17&rft.spage=2332&rft.epage=2333&rft.pages=2332-2333&rft.issn=1367-4803&rft.eissn=1460-2059&rft.coden=BOINFP&rft_id=info:doi/10.1093/bioinformatics/btg321&rft_dat=%3Cproquest_cross%3E71394284%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c478t-6bd0a61711e996438c26fcb7d08e836696815bed230c8404a655c119b671c473%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=198646387&rft_id=info:pmid/14630670&rfr_iscdi=true