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Partial conservation of LFY function between rice and Arabidopsis
The LFY/FLO genes encode plant-specific transcription factors and play major roles in the reproductive transition as well as floral development. In this study, we reconstructed the phylogenetic tree of the 49 LFY/FLO homologs from various plant species. The tree clearly shows that the LFY/FLO genes...
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Published in: | Plant and cell physiology 2003-12, Vol.44 (12), p.1311-1319 |
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description | The LFY/FLO genes encode plant-specific transcription factors and play major roles in the reproductive transition as well as floral development. In this study, we reconstructed the phylogenetic tree of the 49 LFY/FLO homologs from various plant species. The tree clearly shows that the LFY/FLO genes from the eudicots and monocots formed the two monophyletic clusters with very high bootstrap probabilities, respectively. Furthermore, grass LFY/FLO genes have experienced significant acceleration of amino acid replacement rate compared with the eudicot homolog. To test whether grass LFY/FLO genes have a conserved function with those of eudicots, we introduced RFL, a rice LFY homolog, into the Arabidopsis lfy mutant. The RFL gene driven by LFY promoter partially rescued the lfy mutation, suggesting that the functions of LFY and RFL partly overlap. Interestingly, the RFL but not LFY, strongly activated the expression of AP1 and AG, the downstream targets of LFY, even in the vegetative tissues. The LFY::RFL transgenic Arabidopsis plants exhibited abnormal patterns of development such as leaf curling, bushy appearance and the transformation of ovules into carpels. All of the results indicate that both the partial conservation and divergence of LFY function between rice and Arabidopsis. |
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In this study, we reconstructed the phylogenetic tree of the 49 LFY/FLO homologs from various plant species. The tree clearly shows that the LFY/FLO genes from the eudicots and monocots formed the two monophyletic clusters with very high bootstrap probabilities, respectively. Furthermore, grass LFY/FLO genes have experienced significant acceleration of amino acid replacement rate compared with the eudicot homolog. To test whether grass LFY/FLO genes have a conserved function with those of eudicots, we introduced RFL, a rice LFY homolog, into the Arabidopsis lfy mutant. The RFL gene driven by LFY promoter partially rescued the lfy mutation, suggesting that the functions of LFY and RFL partly overlap. Interestingly, the RFL but not LFY, strongly activated the expression of AP1 and AG, the downstream targets of LFY, even in the vegetative tissues. The LFY::RFL transgenic Arabidopsis plants exhibited abnormal patterns of development such as leaf curling, bushy appearance and the transformation of ovules into carpels. All of the results indicate that both the partial conservation and divergence of LFY function between rice and Arabidopsis.</description><identifier>ISSN: 0032-0781</identifier><identifier>EISSN: 1471-9053</identifier><identifier>DOI: 10.1093/pcp/pcg155</identifier><identifier>PMID: 14701926</identifier><language>eng</language><publisher>Japan: Oxford University Press</publisher><subject>Amino Acid Sequence ; amino acid sequences ; Anthirrhinum FLO protein ; Antirrhinum majus ; Arabidopsis - genetics ; Arabidopsis - growth & development ; Arabidopsis APETALA 1 protein ; Arabidopsis LFY protein ; Arabidopsis Proteins - genetics ; Arabidopsis Proteins - physiology ; Arabidopsis thaliana ; Arabiodopsis AGAMOUS protein ; Conserved Sequence - genetics ; Conserved Sequence - physiology ; conserved sequences ; flowering ; Flowers - genetics ; Flowers - growth & development ; gene expression ; Gene Expression Regulation, Developmental ; Gene Expression Regulation, Plant ; genetic complementation ; Genetic Complementation Test ; grain crops ; Keywords: Divergence — Flower development — Grass species — LFY/FLO — Phylogeny — RFL ; leaves ; Molecular Sequence Data ; Mutation ; Oryza - genetics ; Oryza - growth & development ; Oryza RFL protein ; Oryza sativa ; ovules ; Phenotype ; Phylogeny ; Plant Leaves - genetics ; Plant Leaves - growth & development ; plant morphology ; plant proteins ; Plant Proteins - genetics ; Plant Proteins - physiology ; Plants, Genetically Modified ; rice ; sequence alignment ; Sequence Homology, Amino Acid ; transcription factors ; Transcription Factors - genetics ; Transcription Factors - physiology ; transgenic plants ; vegetative growth</subject><ispartof>Plant and cell physiology, 2003-12, Vol.44 (12), p.1311-1319</ispartof><rights>Copyright Oxford University Press(England) Dec 15, 2003</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c499t-675d6a525f5e293966276668c1b0e2c6760d5f249c9fb2fb9b3be2b7cc52284b3</citedby><cites>FETCH-LOGICAL-c499t-675d6a525f5e293966276668c1b0e2c6760d5f249c9fb2fb9b3be2b7cc52284b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14701926$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chujo, A</creatorcontrib><creatorcontrib>Zhang, Z</creatorcontrib><creatorcontrib>Kishino, H</creatorcontrib><creatorcontrib>Shimamoto, K</creatorcontrib><creatorcontrib>Kyozuka, J</creatorcontrib><title>Partial conservation of LFY function between rice and Arabidopsis</title><title>Plant and cell physiology</title><addtitle>Plant Cell Physiol</addtitle><description>The LFY/FLO genes encode plant-specific transcription factors and play major roles in the reproductive transition as well as floral development. In this study, we reconstructed the phylogenetic tree of the 49 LFY/FLO homologs from various plant species. The tree clearly shows that the LFY/FLO genes from the eudicots and monocots formed the two monophyletic clusters with very high bootstrap probabilities, respectively. Furthermore, grass LFY/FLO genes have experienced significant acceleration of amino acid replacement rate compared with the eudicot homolog. To test whether grass LFY/FLO genes have a conserved function with those of eudicots, we introduced RFL, a rice LFY homolog, into the Arabidopsis lfy mutant. The RFL gene driven by LFY promoter partially rescued the lfy mutation, suggesting that the functions of LFY and RFL partly overlap. Interestingly, the RFL but not LFY, strongly activated the expression of AP1 and AG, the downstream targets of LFY, even in the vegetative tissues. The LFY::RFL transgenic Arabidopsis plants exhibited abnormal patterns of development such as leaf curling, bushy appearance and the transformation of ovules into carpels. All of the results indicate that both the partial conservation and divergence of LFY function between rice and Arabidopsis.</description><subject>Amino Acid Sequence</subject><subject>amino acid sequences</subject><subject>Anthirrhinum FLO protein</subject><subject>Antirrhinum majus</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - growth & development</subject><subject>Arabidopsis APETALA 1 protein</subject><subject>Arabidopsis LFY protein</subject><subject>Arabidopsis Proteins - genetics</subject><subject>Arabidopsis Proteins - physiology</subject><subject>Arabidopsis thaliana</subject><subject>Arabiodopsis AGAMOUS protein</subject><subject>Conserved Sequence - genetics</subject><subject>Conserved Sequence - physiology</subject><subject>conserved sequences</subject><subject>flowering</subject><subject>Flowers - genetics</subject><subject>Flowers - growth & development</subject><subject>gene expression</subject><subject>Gene Expression Regulation, Developmental</subject><subject>Gene Expression Regulation, Plant</subject><subject>genetic complementation</subject><subject>Genetic Complementation Test</subject><subject>grain crops</subject><subject>Keywords: Divergence — Flower development — Grass species — LFY/FLO — Phylogeny — RFL</subject><subject>leaves</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>Oryza - genetics</subject><subject>Oryza - growth & development</subject><subject>Oryza RFL protein</subject><subject>Oryza sativa</subject><subject>ovules</subject><subject>Phenotype</subject><subject>Phylogeny</subject><subject>Plant Leaves - genetics</subject><subject>Plant Leaves - growth & development</subject><subject>plant morphology</subject><subject>plant proteins</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - physiology</subject><subject>Plants, Genetically Modified</subject><subject>rice</subject><subject>sequence alignment</subject><subject>Sequence Homology, Amino Acid</subject><subject>transcription factors</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - physiology</subject><subject>transgenic plants</subject><subject>vegetative growth</subject><issn>0032-0781</issn><issn>1471-9053</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><recordid>eNpd0EFLHDEUB_BQWupqe-kHaIcePAhjX5JJMjkuUrWwoKCi9RKSTCKxu5MxmdH67Y2dpYUewkt4P14ef4Q-YTjEIOm3wQ7l3GHG3qAFbgSuJTD6Fi0AKKlBtHgH7eZ8D1DuFN6jnYIAS8IXaHmu0xj0urKxzy496jHEvoq-Wh3_rPzU2z9v48Yn5_oqBesq3XfVMmkTujjkkD-gd16vs_u4rXvo6vj75dFpvTo7-XG0XNW2kXKsuWAd14wwzxyRVHJOBOe8tdiAI5YLDh3zpJFWekO8kYYaR4ywlhHSNobuof157pDiw-TyqDYhW7de697FKSuBG0mwkAV-_Q_exyn1ZTdFAHNMMGkLOpiRTTHn5LwaUtjo9KwwqNdUVUlVzakW_Hk7cTIb1_2j2xgLqGcQ8uh-_-3r9EtxQQVTpze36qJpL1dwfatE8V9m73VU-i6FrK4uynIUys8tZUBfAJ7vikQ</recordid><startdate>20031201</startdate><enddate>20031201</enddate><creator>Chujo, A</creator><creator>Zhang, Z</creator><creator>Kishino, H</creator><creator>Shimamoto, K</creator><creator>Kyozuka, J</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QP</scope><scope>7T5</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20031201</creationdate><title>Partial conservation of LFY function between rice and Arabidopsis</title><author>Chujo, A ; Zhang, Z ; Kishino, H ; Shimamoto, K ; Kyozuka, J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c499t-675d6a525f5e293966276668c1b0e2c6760d5f249c9fb2fb9b3be2b7cc52284b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Amino Acid Sequence</topic><topic>amino acid sequences</topic><topic>Anthirrhinum FLO protein</topic><topic>Antirrhinum majus</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - growth & development</topic><topic>Arabidopsis APETALA 1 protein</topic><topic>Arabidopsis LFY protein</topic><topic>Arabidopsis Proteins - genetics</topic><topic>Arabidopsis Proteins - physiology</topic><topic>Arabidopsis thaliana</topic><topic>Arabiodopsis AGAMOUS protein</topic><topic>Conserved Sequence - genetics</topic><topic>Conserved Sequence - physiology</topic><topic>conserved sequences</topic><topic>flowering</topic><topic>Flowers - genetics</topic><topic>Flowers - growth & development</topic><topic>gene expression</topic><topic>Gene Expression Regulation, Developmental</topic><topic>Gene Expression Regulation, Plant</topic><topic>genetic complementation</topic><topic>Genetic Complementation Test</topic><topic>grain crops</topic><topic>Keywords: Divergence — Flower development — Grass species — LFY/FLO — Phylogeny — RFL</topic><topic>leaves</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>Oryza - genetics</topic><topic>Oryza - growth & development</topic><topic>Oryza RFL protein</topic><topic>Oryza sativa</topic><topic>ovules</topic><topic>Phenotype</topic><topic>Phylogeny</topic><topic>Plant Leaves - genetics</topic><topic>Plant Leaves - growth & development</topic><topic>plant morphology</topic><topic>plant proteins</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - physiology</topic><topic>Plants, Genetically Modified</topic><topic>rice</topic><topic>sequence alignment</topic><topic>Sequence Homology, Amino Acid</topic><topic>transcription factors</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - physiology</topic><topic>transgenic plants</topic><topic>vegetative growth</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chujo, A</creatorcontrib><creatorcontrib>Zhang, Z</creatorcontrib><creatorcontrib>Kishino, H</creatorcontrib><creatorcontrib>Shimamoto, K</creatorcontrib><creatorcontrib>Kyozuka, J</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Immunology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Plant and cell physiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chujo, A</au><au>Zhang, Z</au><au>Kishino, H</au><au>Shimamoto, K</au><au>Kyozuka, J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Partial conservation of LFY function between rice and Arabidopsis</atitle><jtitle>Plant and cell physiology</jtitle><addtitle>Plant Cell Physiol</addtitle><date>2003-12-01</date><risdate>2003</risdate><volume>44</volume><issue>12</issue><spage>1311</spage><epage>1319</epage><pages>1311-1319</pages><issn>0032-0781</issn><eissn>1471-9053</eissn><abstract>The LFY/FLO genes encode plant-specific transcription factors and play major roles in the reproductive transition as well as floral development. In this study, we reconstructed the phylogenetic tree of the 49 LFY/FLO homologs from various plant species. The tree clearly shows that the LFY/FLO genes from the eudicots and monocots formed the two monophyletic clusters with very high bootstrap probabilities, respectively. Furthermore, grass LFY/FLO genes have experienced significant acceleration of amino acid replacement rate compared with the eudicot homolog. To test whether grass LFY/FLO genes have a conserved function with those of eudicots, we introduced RFL, a rice LFY homolog, into the Arabidopsis lfy mutant. The RFL gene driven by LFY promoter partially rescued the lfy mutation, suggesting that the functions of LFY and RFL partly overlap. Interestingly, the RFL but not LFY, strongly activated the expression of AP1 and AG, the downstream targets of LFY, even in the vegetative tissues. The LFY::RFL transgenic Arabidopsis plants exhibited abnormal patterns of development such as leaf curling, bushy appearance and the transformation of ovules into carpels. All of the results indicate that both the partial conservation and divergence of LFY function between rice and Arabidopsis.</abstract><cop>Japan</cop><pub>Oxford University Press</pub><pmid>14701926</pmid><doi>10.1093/pcp/pcg155</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence amino acid sequences Anthirrhinum FLO protein Antirrhinum majus Arabidopsis - genetics Arabidopsis - growth & development Arabidopsis APETALA 1 protein Arabidopsis LFY protein Arabidopsis Proteins - genetics Arabidopsis Proteins - physiology Arabidopsis thaliana Arabiodopsis AGAMOUS protein Conserved Sequence - genetics Conserved Sequence - physiology conserved sequences flowering Flowers - genetics Flowers - growth & development gene expression Gene Expression Regulation, Developmental Gene Expression Regulation, Plant genetic complementation Genetic Complementation Test grain crops Keywords: Divergence — Flower development — Grass species — LFY/FLO — Phylogeny — RFL leaves Molecular Sequence Data Mutation Oryza - genetics Oryza - growth & development Oryza RFL protein Oryza sativa ovules Phenotype Phylogeny Plant Leaves - genetics Plant Leaves - growth & development plant morphology plant proteins Plant Proteins - genetics Plant Proteins - physiology Plants, Genetically Modified rice sequence alignment Sequence Homology, Amino Acid transcription factors Transcription Factors - genetics Transcription Factors - physiology transgenic plants vegetative growth |
title | Partial conservation of LFY function between rice and Arabidopsis |
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