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Cloning, Expression, and Initial Characterization of a Novel Cytokine-like Gene Family
We report the identification and characterization of a novel cytokine-like gene family using structure-based methods to search for novel four-helix-bundle cytokines in genomics databases. There are four genes in this family, FAM3A, FAM3B, FAM3C, and FAM3D, each encoding a protein (224–235 amino acid...
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Published in: | Genomics (San Diego, Calif.) Calif.), 2002-08, Vol.80 (2), p.144-150 |
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creator | Zhu, Yuan Xu, Gang Patel, Arun McLaughlin, Megan M. Silverman, Carol Knecht, Kristin A. Sweitzer, Sharon Li, Xiaotong McDonnell, Peter Mirabile, Rosanna Zimmerman, Dawn Boyce, Rogely Tierney, Lauren A. Hu, Erding Livi, George P. Wolf, Bryan A. Abdel-Meguid, Sherin S. Rose, George D. Aurora, Rejeev Hensley, Preston Briggs, Michael Young, Peter R. |
description | We report the identification and characterization of a novel cytokine-like gene family using structure-based methods to search for novel four-helix-bundle cytokines in genomics databases. There are four genes in this family,
FAM3A,
FAM3B,
FAM3C, and
FAM3D, each encoding a protein (224–235 amino acids) with a hydrophobic leader sequence. Northern analysis indicates that
FAM3B is highly expressed in pancreas,
FAM3D in placenta, and
FAM3A and
FAM3C in almost all tissues. Immunohistochemistry showed that
FAM3A is expressed prominently in the vascular endothelium, particularly capillaries. We found that FAM3A and FAM3B protein were both localized to the islets of Langerhans of the endocrine pancreas. Recombinant FAM3B protein has delayed effects on β-cell function, inhibiting basal insulin secretion from a β-cell line in a dose-dependent manner. |
doi_str_mv | 10.1006/geno.2002.6816 |
format | article |
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FAM3A,
FAM3B,
FAM3C, and
FAM3D, each encoding a protein (224–235 amino acids) with a hydrophobic leader sequence. Northern analysis indicates that
FAM3B is highly expressed in pancreas,
FAM3D in placenta, and
FAM3A and
FAM3C in almost all tissues. Immunohistochemistry showed that
FAM3A is expressed prominently in the vascular endothelium, particularly capillaries. We found that FAM3A and FAM3B protein were both localized to the islets of Langerhans of the endocrine pancreas. Recombinant FAM3B protein has delayed effects on β-cell function, inhibiting basal insulin secretion from a β-cell line in a dose-dependent manner.</description><identifier>ISSN: 0888-7543</identifier><identifier>EISSN: 1089-8646</identifier><identifier>DOI: 10.1006/geno.2002.6816</identifier><identifier>PMID: 12160727</identifier><language>eng</language><publisher>San Diego, CA: Elsevier Inc</publisher><subject>Animals ; Biological and medical sciences ; Blotting, Northern ; Chromosome Mapping ; Computational Biology ; Cytokines - biosynthesis ; Cytokines - genetics ; Cytokines - metabolism ; Cytokines - pharmacology ; Fundamental and applied biological sciences. Psychology ; Genes. Genome ; Humans ; Immunohistochemistry ; Insulin - metabolism ; Insulin Secretion ; Islets of Langerhans - drug effects ; Islets of Langerhans - metabolism ; Mice ; Molecular and cellular biology ; Molecular genetics ; Multigene Family</subject><ispartof>Genomics (San Diego, Calif.), 2002-08, Vol.80 (2), p.144-150</ispartof><rights>2002 Elsevier Science (USA)</rights><rights>2003 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c467t-7ff35330949f9f0cc38c67d1e9a7dcdbc8d9b4197f5f6fc008301982ae5909313</citedby><cites>FETCH-LOGICAL-c467t-7ff35330949f9f0cc38c67d1e9a7dcdbc8d9b4197f5f6fc008301982ae5909313</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=13901393$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12160727$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhu, Yuan</creatorcontrib><creatorcontrib>Xu, Gang</creatorcontrib><creatorcontrib>Patel, Arun</creatorcontrib><creatorcontrib>McLaughlin, Megan M.</creatorcontrib><creatorcontrib>Silverman, Carol</creatorcontrib><creatorcontrib>Knecht, Kristin A.</creatorcontrib><creatorcontrib>Sweitzer, Sharon</creatorcontrib><creatorcontrib>Li, Xiaotong</creatorcontrib><creatorcontrib>McDonnell, Peter</creatorcontrib><creatorcontrib>Mirabile, Rosanna</creatorcontrib><creatorcontrib>Zimmerman, Dawn</creatorcontrib><creatorcontrib>Boyce, Rogely</creatorcontrib><creatorcontrib>Tierney, Lauren A.</creatorcontrib><creatorcontrib>Hu, Erding</creatorcontrib><creatorcontrib>Livi, George P.</creatorcontrib><creatorcontrib>Wolf, Bryan A.</creatorcontrib><creatorcontrib>Abdel-Meguid, Sherin S.</creatorcontrib><creatorcontrib>Rose, George D.</creatorcontrib><creatorcontrib>Aurora, Rejeev</creatorcontrib><creatorcontrib>Hensley, Preston</creatorcontrib><creatorcontrib>Briggs, Michael</creatorcontrib><creatorcontrib>Young, Peter R.</creatorcontrib><title>Cloning, Expression, and Initial Characterization of a Novel Cytokine-like Gene Family</title><title>Genomics (San Diego, Calif.)</title><addtitle>Genomics</addtitle><description>We report the identification and characterization of a novel cytokine-like gene family using structure-based methods to search for novel four-helix-bundle cytokines in genomics databases. There are four genes in this family,
FAM3A,
FAM3B,
FAM3C, and
FAM3D, each encoding a protein (224–235 amino acids) with a hydrophobic leader sequence. Northern analysis indicates that
FAM3B is highly expressed in pancreas,
FAM3D in placenta, and
FAM3A and
FAM3C in almost all tissues. Immunohistochemistry showed that
FAM3A is expressed prominently in the vascular endothelium, particularly capillaries. We found that FAM3A and FAM3B protein were both localized to the islets of Langerhans of the endocrine pancreas. Recombinant FAM3B protein has delayed effects on β-cell function, inhibiting basal insulin secretion from a β-cell line in a dose-dependent manner.</description><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>Blotting, Northern</subject><subject>Chromosome Mapping</subject><subject>Computational Biology</subject><subject>Cytokines - biosynthesis</subject><subject>Cytokines - genetics</subject><subject>Cytokines - metabolism</subject><subject>Cytokines - pharmacology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes. Genome</subject><subject>Humans</subject><subject>Immunohistochemistry</subject><subject>Insulin - metabolism</subject><subject>Insulin Secretion</subject><subject>Islets of Langerhans - drug effects</subject><subject>Islets of Langerhans - metabolism</subject><subject>Mice</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Multigene Family</subject><issn>0888-7543</issn><issn>1089-8646</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><recordid>eNqFkE1PGzEQhi3UClLaK8fKl3Ji0_F61x_HKgKKhNpL4Wo53jG4bOzU3iDCr6-jROJU9TCawzzvaOYh5IzBnAGIrw8Y07wFaOdCMXFEZgyUbpToxDsyA6VUI_uOn5APpfwGAM1Ve0xOWMsEyFbOyP1iTDHEhwt6-bLOWEpI8YLaONCbGKZgR7p4tNm6CXN4tVOd0uSppT_SM9bZdkpPIWIzhiek1xiRXtlVGLcfyXtvx4KfDv2U3F1d_lp8b25_Xt8svt02rhNyaqT3vOccdKe99uAcV07IgaG2cnDD0qlBLzumpe-98A5AcWBatRZ7XX9h_JSc7_euc_qzwTKZVSgOx9FGTJtiZM32su3-CzIle62VruB8D7qcSsnozTqHlc1bw8DslJudcrNTbnbKa-DzYfNmucLhDT84rsCXA2CLs6PPNrpQ3jiuoRavnNpzWIU9B8ymuIDR4RAyuskMKfzrhr_6QpwV</recordid><startdate>20020801</startdate><enddate>20020801</enddate><creator>Zhu, Yuan</creator><creator>Xu, Gang</creator><creator>Patel, Arun</creator><creator>McLaughlin, Megan M.</creator><creator>Silverman, Carol</creator><creator>Knecht, Kristin A.</creator><creator>Sweitzer, Sharon</creator><creator>Li, Xiaotong</creator><creator>McDonnell, Peter</creator><creator>Mirabile, Rosanna</creator><creator>Zimmerman, Dawn</creator><creator>Boyce, Rogely</creator><creator>Tierney, Lauren A.</creator><creator>Hu, Erding</creator><creator>Livi, George P.</creator><creator>Wolf, Bryan A.</creator><creator>Abdel-Meguid, Sherin S.</creator><creator>Rose, George D.</creator><creator>Aurora, Rejeev</creator><creator>Hensley, Preston</creator><creator>Briggs, Michael</creator><creator>Young, Peter R.</creator><general>Elsevier Inc</general><general>Elsevier</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20020801</creationdate><title>Cloning, Expression, and Initial Characterization of a Novel Cytokine-like Gene Family</title><author>Zhu, Yuan ; Xu, Gang ; Patel, Arun ; McLaughlin, Megan M. ; Silverman, Carol ; Knecht, Kristin A. ; Sweitzer, Sharon ; Li, Xiaotong ; McDonnell, Peter ; Mirabile, Rosanna ; Zimmerman, Dawn ; Boyce, Rogely ; Tierney, Lauren A. ; Hu, Erding ; Livi, George P. ; Wolf, Bryan A. ; Abdel-Meguid, Sherin S. ; Rose, George D. ; Aurora, Rejeev ; Hensley, Preston ; Briggs, Michael ; Young, Peter R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c467t-7ff35330949f9f0cc38c67d1e9a7dcdbc8d9b4197f5f6fc008301982ae5909313</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Animals</topic><topic>Biological and medical sciences</topic><topic>Blotting, Northern</topic><topic>Chromosome Mapping</topic><topic>Computational Biology</topic><topic>Cytokines - biosynthesis</topic><topic>Cytokines - genetics</topic><topic>Cytokines - metabolism</topic><topic>Cytokines - pharmacology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes. Genome</topic><topic>Humans</topic><topic>Immunohistochemistry</topic><topic>Insulin - metabolism</topic><topic>Insulin Secretion</topic><topic>Islets of Langerhans - drug effects</topic><topic>Islets of Langerhans - metabolism</topic><topic>Mice</topic><topic>Molecular and cellular biology</topic><topic>Molecular genetics</topic><topic>Multigene Family</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhu, Yuan</creatorcontrib><creatorcontrib>Xu, Gang</creatorcontrib><creatorcontrib>Patel, Arun</creatorcontrib><creatorcontrib>McLaughlin, Megan M.</creatorcontrib><creatorcontrib>Silverman, Carol</creatorcontrib><creatorcontrib>Knecht, Kristin A.</creatorcontrib><creatorcontrib>Sweitzer, Sharon</creatorcontrib><creatorcontrib>Li, Xiaotong</creatorcontrib><creatorcontrib>McDonnell, Peter</creatorcontrib><creatorcontrib>Mirabile, Rosanna</creatorcontrib><creatorcontrib>Zimmerman, Dawn</creatorcontrib><creatorcontrib>Boyce, Rogely</creatorcontrib><creatorcontrib>Tierney, Lauren A.</creatorcontrib><creatorcontrib>Hu, Erding</creatorcontrib><creatorcontrib>Livi, George P.</creatorcontrib><creatorcontrib>Wolf, Bryan A.</creatorcontrib><creatorcontrib>Abdel-Meguid, Sherin S.</creatorcontrib><creatorcontrib>Rose, George D.</creatorcontrib><creatorcontrib>Aurora, Rejeev</creatorcontrib><creatorcontrib>Hensley, Preston</creatorcontrib><creatorcontrib>Briggs, Michael</creatorcontrib><creatorcontrib>Young, Peter R.</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Genomics (San Diego, Calif.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhu, Yuan</au><au>Xu, Gang</au><au>Patel, Arun</au><au>McLaughlin, Megan M.</au><au>Silverman, Carol</au><au>Knecht, Kristin A.</au><au>Sweitzer, Sharon</au><au>Li, Xiaotong</au><au>McDonnell, Peter</au><au>Mirabile, Rosanna</au><au>Zimmerman, Dawn</au><au>Boyce, Rogely</au><au>Tierney, Lauren A.</au><au>Hu, Erding</au><au>Livi, George P.</au><au>Wolf, Bryan A.</au><au>Abdel-Meguid, Sherin S.</au><au>Rose, George D.</au><au>Aurora, Rejeev</au><au>Hensley, Preston</au><au>Briggs, Michael</au><au>Young, Peter R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cloning, Expression, and Initial Characterization of a Novel Cytokine-like Gene Family</atitle><jtitle>Genomics (San Diego, Calif.)</jtitle><addtitle>Genomics</addtitle><date>2002-08-01</date><risdate>2002</risdate><volume>80</volume><issue>2</issue><spage>144</spage><epage>150</epage><pages>144-150</pages><issn>0888-7543</issn><eissn>1089-8646</eissn><abstract>We report the identification and characterization of a novel cytokine-like gene family using structure-based methods to search for novel four-helix-bundle cytokines in genomics databases. There are four genes in this family,
FAM3A,
FAM3B,
FAM3C, and
FAM3D, each encoding a protein (224–235 amino acids) with a hydrophobic leader sequence. Northern analysis indicates that
FAM3B is highly expressed in pancreas,
FAM3D in placenta, and
FAM3A and
FAM3C in almost all tissues. Immunohistochemistry showed that
FAM3A is expressed prominently in the vascular endothelium, particularly capillaries. We found that FAM3A and FAM3B protein were both localized to the islets of Langerhans of the endocrine pancreas. Recombinant FAM3B protein has delayed effects on β-cell function, inhibiting basal insulin secretion from a β-cell line in a dose-dependent manner.</abstract><cop>San Diego, CA</cop><pub>Elsevier Inc</pub><pmid>12160727</pmid><doi>10.1006/geno.2002.6816</doi><tpages>7</tpages></addata></record> |
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subjects | Animals Biological and medical sciences Blotting, Northern Chromosome Mapping Computational Biology Cytokines - biosynthesis Cytokines - genetics Cytokines - metabolism Cytokines - pharmacology Fundamental and applied biological sciences. Psychology Genes. Genome Humans Immunohistochemistry Insulin - metabolism Insulin Secretion Islets of Langerhans - drug effects Islets of Langerhans - metabolism Mice Molecular and cellular biology Molecular genetics Multigene Family |
title | Cloning, Expression, and Initial Characterization of a Novel Cytokine-like Gene Family |
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