Loading…

Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae

A systematic mathematical procedure capable of detecting the presence of a gross error in the measurements and of reconciling connected data sets by using the maximum likelihood principle is applied to the biomass composition data of yeast. The biomass composition of Saccharomyces cerevisiae grown i...

Full description

Saved in:
Bibliographic Details
Published in:Biotechnology and bioengineering 2001-11, Vol.75 (3), p.334-344
Main Authors: Lange, H. C., Heijnen, J. J.
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c5584-2acd100e8a22956bf9b24a4d4c8b600ce317f27016e466876b9b5378419188b73
cites cdi_FETCH-LOGICAL-c5584-2acd100e8a22956bf9b24a4d4c8b600ce317f27016e466876b9b5378419188b73
container_end_page 344
container_issue 3
container_start_page 334
container_title Biotechnology and bioengineering
container_volume 75
creator Lange, H. C.
Heijnen, J. J.
description A systematic mathematical procedure capable of detecting the presence of a gross error in the measurements and of reconciling connected data sets by using the maximum likelihood principle is applied to the biomass composition data of yeast. The biomass composition of Saccharomyces cerevisiae grown in a chemostat under glucose limitation was analyzed for its elemental and for its molecular composition. Both descriptions initially resulted in conflicting results concerning the elemental composition, molecular weight, and degrees of reduction. The application of the statistical reconciliation method, based on elemental balances and equality relations, is used to obtain a consistent biomass composition. Simultaneously, the error margins of the data sets are significantly reduced in the reconciliation process. On the basis of statistical analysis it was found that inclusion of about 4% water in the list of biomass constituents is essential to adequately describe the dry biomass and match both set of measurements. The reconciled carbon content of the biomass varied 4% from the ones obtained from the molecular analysis. The proposed method increases the accuracy of biomass composition data of its elements and its molecules by providing a best estimate based on all available data and thus provides an improved and consistent basis for metabolic flux analysis as well as black box modeling approaches. © 2001 John Wiley & Sons Inc. Biotechnol and Bioeng 75: 334–344, 2001.
doi_str_mv 10.1002/bit.10054
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_72178983</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>72178983</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5584-2acd100e8a22956bf9b24a4d4c8b600ce317f27016e466876b9b5378419188b73</originalsourceid><addsrcrecordid>eNqFkU9vEzEQxS0EoqFw4AugvYDEYenYXv87QqClogKJFDhatjOrGnbXwd4A-fa4JKUnxMn2zO_NyO8R8pjCCwrATnycry-iu0MWFIxqgRm4SxYAIFsuDDsiD0r5Wp9KS3mfHFEqDEiQCxJXs5tjmWNwQ5MxpCnEIdZSmprUN_MVNjjgiNNc-25aN2MaMGwHlxsf0-hKaUIaN6nEG8nKhXDlchp3AWsTM_6IJTp8SO71bij46HAek0-nby6Xb9uLD2fny5cXbRBCdy1zYV3_gtoxZoT0vfGsc926C9pLgICcqp4poBI7KbWS3njBle6ooVp7xY_Js_3cTU7ft1hmO8YScBjchGlbrGJUaaP5f0GqJRhgsoLP92DIqZSMvd3kOLq8sxTsdQC2BmD_BFDZJ4ehWz_i-pY8OF6BpwfAlep5n111vNxyHeVCc6jcyZ77GQfc_XujfXV-ebO63StqnPjrr8Llb1YqroT98v7MLl-ffv7I3q2s5L8B5aqr-A</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>18609026</pqid></control><display><type>article</type><title>Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae</title><source>Wiley-Blackwell Read &amp; Publish Collection</source><creator>Lange, H. C. ; Heijnen, J. J.</creator><creatorcontrib>Lange, H. C. ; Heijnen, J. J.</creatorcontrib><description>A systematic mathematical procedure capable of detecting the presence of a gross error in the measurements and of reconciling connected data sets by using the maximum likelihood principle is applied to the biomass composition data of yeast. The biomass composition of Saccharomyces cerevisiae grown in a chemostat under glucose limitation was analyzed for its elemental and for its molecular composition. Both descriptions initially resulted in conflicting results concerning the elemental composition, molecular weight, and degrees of reduction. The application of the statistical reconciliation method, based on elemental balances and equality relations, is used to obtain a consistent biomass composition. Simultaneously, the error margins of the data sets are significantly reduced in the reconciliation process. On the basis of statistical analysis it was found that inclusion of about 4% water in the list of biomass constituents is essential to adequately describe the dry biomass and match both set of measurements. The reconciled carbon content of the biomass varied 4% from the ones obtained from the molecular analysis. The proposed method increases the accuracy of biomass composition data of its elements and its molecules by providing a best estimate based on all available data and thus provides an improved and consistent basis for metabolic flux analysis as well as black box modeling approaches. © 2001 John Wiley &amp; Sons Inc. Biotechnol and Bioeng 75: 334–344, 2001.</description><identifier>ISSN: 0006-3592</identifier><identifier>EISSN: 1097-0290</identifier><identifier>DOI: 10.1002/bit.10054</identifier><identifier>PMID: 11590606</identifier><identifier>CODEN: BIBIAU</identifier><language>eng</language><publisher>New York: John Wiley &amp; Sons, Inc</publisher><subject>Biological and medical sciences ; Biomass ; biomass composition ; Biotechnology ; elemental balances ; equality relations ; Fundamental and applied biological sciences. Psychology ; Methods. Procedures. Technologies ; Others ; Saccharomyces cerevisiae - chemistry ; statistical reconciliation method ; Various methods and equipments ; Water - analysis</subject><ispartof>Biotechnology and bioengineering, 2001-11, Vol.75 (3), p.334-344</ispartof><rights>Copyright © 2001 John Wiley &amp; Sons, Inc.</rights><rights>2002 INIST-CNRS</rights><rights>Copyright 2001 John Wiley &amp; Sons Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5584-2acd100e8a22956bf9b24a4d4c8b600ce317f27016e466876b9b5378419188b73</citedby><cites>FETCH-LOGICAL-c5584-2acd100e8a22956bf9b24a4d4c8b600ce317f27016e466876b9b5378419188b73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=14135830$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11590606$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lange, H. C.</creatorcontrib><creatorcontrib>Heijnen, J. J.</creatorcontrib><title>Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae</title><title>Biotechnology and bioengineering</title><addtitle>Biotechnol. Bioeng</addtitle><description>A systematic mathematical procedure capable of detecting the presence of a gross error in the measurements and of reconciling connected data sets by using the maximum likelihood principle is applied to the biomass composition data of yeast. The biomass composition of Saccharomyces cerevisiae grown in a chemostat under glucose limitation was analyzed for its elemental and for its molecular composition. Both descriptions initially resulted in conflicting results concerning the elemental composition, molecular weight, and degrees of reduction. The application of the statistical reconciliation method, based on elemental balances and equality relations, is used to obtain a consistent biomass composition. Simultaneously, the error margins of the data sets are significantly reduced in the reconciliation process. On the basis of statistical analysis it was found that inclusion of about 4% water in the list of biomass constituents is essential to adequately describe the dry biomass and match both set of measurements. The reconciled carbon content of the biomass varied 4% from the ones obtained from the molecular analysis. The proposed method increases the accuracy of biomass composition data of its elements and its molecules by providing a best estimate based on all available data and thus provides an improved and consistent basis for metabolic flux analysis as well as black box modeling approaches. © 2001 John Wiley &amp; Sons Inc. Biotechnol and Bioeng 75: 334–344, 2001.</description><subject>Biological and medical sciences</subject><subject>Biomass</subject><subject>biomass composition</subject><subject>Biotechnology</subject><subject>elemental balances</subject><subject>equality relations</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Methods. Procedures. Technologies</subject><subject>Others</subject><subject>Saccharomyces cerevisiae - chemistry</subject><subject>statistical reconciliation method</subject><subject>Various methods and equipments</subject><subject>Water - analysis</subject><issn>0006-3592</issn><issn>1097-0290</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2001</creationdate><recordtype>article</recordtype><recordid>eNqFkU9vEzEQxS0EoqFw4AugvYDEYenYXv87QqClogKJFDhatjOrGnbXwd4A-fa4JKUnxMn2zO_NyO8R8pjCCwrATnycry-iu0MWFIxqgRm4SxYAIFsuDDsiD0r5Wp9KS3mfHFEqDEiQCxJXs5tjmWNwQ5MxpCnEIdZSmprUN_MVNjjgiNNc-25aN2MaMGwHlxsf0-hKaUIaN6nEG8nKhXDlchp3AWsTM_6IJTp8SO71bij46HAek0-nby6Xb9uLD2fny5cXbRBCdy1zYV3_gtoxZoT0vfGsc926C9pLgICcqp4poBI7KbWS3njBle6ooVp7xY_Js_3cTU7ft1hmO8YScBjchGlbrGJUaaP5f0GqJRhgsoLP92DIqZSMvd3kOLq8sxTsdQC2BmD_BFDZJ4ehWz_i-pY8OF6BpwfAlep5n111vNxyHeVCc6jcyZ77GQfc_XujfXV-ebO63StqnPjrr8Llb1YqroT98v7MLl-ffv7I3q2s5L8B5aqr-A</recordid><startdate>20011105</startdate><enddate>20011105</enddate><creator>Lange, H. C.</creator><creator>Heijnen, J. J.</creator><general>John Wiley &amp; Sons, Inc</general><general>Wiley</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>M7N</scope><scope>7X8</scope></search><sort><creationdate>20011105</creationdate><title>Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae</title><author>Lange, H. C. ; Heijnen, J. J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5584-2acd100e8a22956bf9b24a4d4c8b600ce317f27016e466876b9b5378419188b73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2001</creationdate><topic>Biological and medical sciences</topic><topic>Biomass</topic><topic>biomass composition</topic><topic>Biotechnology</topic><topic>elemental balances</topic><topic>equality relations</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Methods. Procedures. Technologies</topic><topic>Others</topic><topic>Saccharomyces cerevisiae - chemistry</topic><topic>statistical reconciliation method</topic><topic>Various methods and equipments</topic><topic>Water - analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lange, H. C.</creatorcontrib><creatorcontrib>Heijnen, J. J.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><jtitle>Biotechnology and bioengineering</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lange, H. C.</au><au>Heijnen, J. J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae</atitle><jtitle>Biotechnology and bioengineering</jtitle><addtitle>Biotechnol. Bioeng</addtitle><date>2001-11-05</date><risdate>2001</risdate><volume>75</volume><issue>3</issue><spage>334</spage><epage>344</epage><pages>334-344</pages><issn>0006-3592</issn><eissn>1097-0290</eissn><coden>BIBIAU</coden><abstract>A systematic mathematical procedure capable of detecting the presence of a gross error in the measurements and of reconciling connected data sets by using the maximum likelihood principle is applied to the biomass composition data of yeast. The biomass composition of Saccharomyces cerevisiae grown in a chemostat under glucose limitation was analyzed for its elemental and for its molecular composition. Both descriptions initially resulted in conflicting results concerning the elemental composition, molecular weight, and degrees of reduction. The application of the statistical reconciliation method, based on elemental balances and equality relations, is used to obtain a consistent biomass composition. Simultaneously, the error margins of the data sets are significantly reduced in the reconciliation process. On the basis of statistical analysis it was found that inclusion of about 4% water in the list of biomass constituents is essential to adequately describe the dry biomass and match both set of measurements. The reconciled carbon content of the biomass varied 4% from the ones obtained from the molecular analysis. The proposed method increases the accuracy of biomass composition data of its elements and its molecules by providing a best estimate based on all available data and thus provides an improved and consistent basis for metabolic flux analysis as well as black box modeling approaches. © 2001 John Wiley &amp; Sons Inc. Biotechnol and Bioeng 75: 334–344, 2001.</abstract><cop>New York</cop><pub>John Wiley &amp; Sons, Inc</pub><pmid>11590606</pmid><doi>10.1002/bit.10054</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0006-3592
ispartof Biotechnology and bioengineering, 2001-11, Vol.75 (3), p.334-344
issn 0006-3592
1097-0290
language eng
recordid cdi_proquest_miscellaneous_72178983
source Wiley-Blackwell Read & Publish Collection
subjects Biological and medical sciences
Biomass
biomass composition
Biotechnology
elemental balances
equality relations
Fundamental and applied biological sciences. Psychology
Methods. Procedures. Technologies
Others
Saccharomyces cerevisiae - chemistry
statistical reconciliation method
Various methods and equipments
Water - analysis
title Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-02T05%3A45%3A17IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Statistical%20reconciliation%20of%20the%20elemental%20and%20molecular%20biomass%20composition%20of%20Saccharomyces%20cerevisiae&rft.jtitle=Biotechnology%20and%20bioengineering&rft.au=Lange,%20H.%20C.&rft.date=2001-11-05&rft.volume=75&rft.issue=3&rft.spage=334&rft.epage=344&rft.pages=334-344&rft.issn=0006-3592&rft.eissn=1097-0290&rft.coden=BIBIAU&rft_id=info:doi/10.1002/bit.10054&rft_dat=%3Cproquest_cross%3E72178983%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c5584-2acd100e8a22956bf9b24a4d4c8b600ce317f27016e466876b9b5378419188b73%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=18609026&rft_id=info:pmid/11590606&rfr_iscdi=true