OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity

A program OBSTRUCT has been developed to obtain the largest possible subset according to specific constraints from a set of protein sequences whose tertiary structures have been determined crystallographically. The user can request a range in sequence similarity level and/or structural resolution. T...

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Bibliographic Details
Published in:Bioinformatics 1992-12, Vol.8 (6), p.599-600
Main Authors: Heringa, Jaap, Sommerfeldt, Hubert, Higgins, Desmond, Argos, Patrick
Format: Article
Language:English
Subjects:
Biological and medical sciences
Diverse techniques
Fundamental and applied biological sciences. Psychology
Molecular and cellular biology
Protein Conformation
Software
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Description
Summary:A program OBSTRUCT has been developed to obtain the largest possible subset according to specific constraints from a set of protein sequences whose tertiary structures have been determined crystallographically. The user can request a range in sequence similarity level and/or structural resolution. The program optionally includes sequences with known three–dimensional folds elicited from NMR data.
ISSN:1367-4803
0266-7061
1460-2059
DOI:10.1093/bioinformatics/8.6.599