Linking genotype to phenotype: the International Rice Information System (IRIS)

The International Rice Information System (IRIS, http://www.iris.irri.org) is the rice implementation of the International Crop Information System (ICIS, http://www.icis.cgiar.org), a database system for the management and integration of global information on genetic resources and germplasm improvem...

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Bibliographic Details
Published in:Bioinformatics 2003, Vol.19 (suppl-1), p.i63-i65
Main Authors: Bruskiewich, Richard M., Cosico, Alexander B., Eusebio, William, Portugal, Arllet M., Ramos, Luralyn M., Reyes, Ma. Teresa, Sallan, May Ann B., Ulat, Victor Jun M., Wang, Xusheng, McNally, Kenneth L., Sackville Hamilton, Ruaraidh, McLaren, Christopher Graham
Format: Article
Language:English
Subjects:
Database Management Systems
Databases, Genetic
Gene Expression Profiling - methods
Genotype
Information Dissemination - methods
Information Storage and Retrieval - methods
Internationality
Oryza - classification
Oryza - genetics
Oryza - metabolism
Phenotype
Plant Proteins - classification
Plant Proteins - genetics
Plant Proteins - metabolism
Software
Software Design
Systems Integration
User-Computer Interface
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Summary:The International Rice Information System (IRIS, http://www.iris.irri.org) is the rice implementation of the International Crop Information System (ICIS, http://www.icis.cgiar.org), a database system for the management and integration of global information on genetic resources and germplasm improvement for any crop. Building upon the germplasm genealogy and field data components of ICIS, IRIS is being extended to handle diverse rice genomics data including: genetic mapping, genome annotation, genotype, mutant, transcripteome, proteome and metabolomic data. Users can access information in the database through stand-alone programs and WWW interfaces offering specialist views to researchers with different interests. Availability: http://bioinformatics.org/project/?group_id=141 Contact: r.bruskiewich@cgiar.org Keywords: database, crop, rice, germplasm, genotype, phenotype, genomics * To whom correspondence should be addressed.
ISSN:1367-4803
1460-2059
1367-4811
DOI:10.1093/bioinformatics/btg1006