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'Candidatus Rickettsia tarasevichiae' in Ixodes persulcatus Ticks Collected in Russia
: We collected 209 Ixodes persulcatus ticks in various regions of Russia, including the southern Urals and western and eastern Siberia. Using PCR amplification and sequencing of the citrate synthase‐encoding gene (gltA), we detected a new rickettsial genotype, which we named ‘Candidatus Rickettsia t...
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Published in: | Annals of the New York Academy of Sciences 2003-06, Vol.990 (1), p.162-172 |
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creator | SHPYNOV, STANISLAV FOURNIER, PIERRE-EDOUARD RUDAKOV, NIKOLAY RAOULT, DIDIER |
description | : We collected 209 Ixodes persulcatus ticks in various regions of Russia, including the southern Urals and western and eastern Siberia. Using PCR amplification and sequencing of the citrate synthase‐encoding gene (gltA), we detected a new rickettsial genotype, which we named ‘Candidatus Rickettsia tarasevichiae.’ This bacterium was found in 9.27%, 10.0%, and 20.5% of the ticks collected in western Siberia, eastern Siberia, and the southern Urals, respectively. ‘Candidatus Rickettsia tarasevichiae’ exhibited a 98% and 96% nucleotide sequence homology, with the 16S rDNA and gltA sequence, respectively, of R. canadensis, a rickettsia previously only found in Haemaphysalis leporispalustris ticks in North America. The phylogenetic analysis of ‘Candidatus Rickettsia tarasevichiae’ and other Rickettsia species allowed the creation of a new cluster with high bootstrap values within the Rickettsia genus involving this rickettsia, R. canadensis, and three uncultured rickettsiae from plant insects. |
doi_str_mv | 10.1111/j.1749-6632.2003.tb07358.x |
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Using PCR amplification and sequencing of the citrate synthase‐encoding gene (gltA), we detected a new rickettsial genotype, which we named ‘Candidatus Rickettsia tarasevichiae.’ This bacterium was found in 9.27%, 10.0%, and 20.5% of the ticks collected in western Siberia, eastern Siberia, and the southern Urals, respectively. ‘Candidatus Rickettsia tarasevichiae’ exhibited a 98% and 96% nucleotide sequence homology, with the 16S rDNA and gltA sequence, respectively, of R. canadensis, a rickettsia previously only found in Haemaphysalis leporispalustris ticks in North America. The phylogenetic analysis of ‘Candidatus Rickettsia tarasevichiae’ and other Rickettsia species allowed the creation of a new cluster with high bootstrap values within the Rickettsia genus involving this rickettsia, R. canadensis, and three uncultured rickettsiae from plant insects.</description><identifier>ISSN: 0077-8923</identifier><identifier>ISBN: 9781573314442</identifier><identifier>ISBN: 1573314447</identifier><identifier>EISSN: 1749-6632</identifier><identifier>DOI: 10.1111/j.1749-6632.2003.tb07358.x</identifier><identifier>PMID: 12860621</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Animals ; Base Sequence ; Candidatus Rickettsia tarasevichiae ; Citrate (si)-Synthase - genetics ; DNA Primers ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Genotype ; Geography ; Ixodes - microbiology ; Ixodes persulcatus ; Ixodidae ; Phylogeny ; Polymerase Chain Reaction ; Rickettsia ; Rickettsia - classification ; Rickettsia - genetics ; Rickettsia - isolation & purification ; RNA, Ribosomal, 16S - genetics ; Russia ; Siberia</subject><ispartof>Annals of the New York Academy of Sciences, 2003-06, Vol.990 (1), p.162-172</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5372-7d4543c8c43671566026848811f288c6f4287941e9e25573aa1eb2cf2868b9ab3</citedby><cites>FETCH-LOGICAL-c5372-7d4543c8c43671566026848811f288c6f4287941e9e25573aa1eb2cf2868b9ab3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>309,310,314,780,784,789,790,27922,27923</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12860621$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Raoult, DA (eds)</contributor><contributor>Avisic-Zupanc, T</contributor><contributor>Childs, JE</contributor><contributor>Hechemy, KE</contributor><creatorcontrib>SHPYNOV, STANISLAV</creatorcontrib><creatorcontrib>FOURNIER, PIERRE-EDOUARD</creatorcontrib><creatorcontrib>RUDAKOV, NIKOLAY</creatorcontrib><creatorcontrib>RAOULT, DIDIER</creatorcontrib><title>'Candidatus Rickettsia tarasevichiae' in Ixodes persulcatus Ticks Collected in Russia</title><title>Annals of the New York Academy of Sciences</title><addtitle>Ann N Y Acad Sci</addtitle><description>: We collected 209 Ixodes persulcatus ticks in various regions of Russia, including the southern Urals and western and eastern Siberia. Using PCR amplification and sequencing of the citrate synthase‐encoding gene (gltA), we detected a new rickettsial genotype, which we named ‘Candidatus Rickettsia tarasevichiae.’ This bacterium was found in 9.27%, 10.0%, and 20.5% of the ticks collected in western Siberia, eastern Siberia, and the southern Urals, respectively. ‘Candidatus Rickettsia tarasevichiae’ exhibited a 98% and 96% nucleotide sequence homology, with the 16S rDNA and gltA sequence, respectively, of R. canadensis, a rickettsia previously only found in Haemaphysalis leporispalustris ticks in North America. The phylogenetic analysis of ‘Candidatus Rickettsia tarasevichiae’ and other Rickettsia species allowed the creation of a new cluster with high bootstrap values within the Rickettsia genus involving this rickettsia, R. canadensis, and three uncultured rickettsiae from plant insects.</description><subject>Animals</subject><subject>Base Sequence</subject><subject>Candidatus Rickettsia tarasevichiae</subject><subject>Citrate (si)-Synthase - genetics</subject><subject>DNA Primers</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Genotype</subject><subject>Geography</subject><subject>Ixodes - microbiology</subject><subject>Ixodes persulcatus</subject><subject>Ixodidae</subject><subject>Phylogeny</subject><subject>Polymerase Chain Reaction</subject><subject>Rickettsia</subject><subject>Rickettsia - classification</subject><subject>Rickettsia - genetics</subject><subject>Rickettsia - isolation & purification</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Russia</subject><subject>Siberia</subject><issn>0077-8923</issn><issn>1749-6632</issn><isbn>9781573314442</isbn><isbn>1573314447</isbn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><recordid>eNqVkU1P3DAQhi1aVJaPv1BFPZRTgsd2bIdLhbYtIK2oRBeqnizHmRVespttnMDy73HYFT0ifJnDPO9rjR5CvgDNIL6TeQZKFKmUnGWMUp51JVU819l6h4xeVx_IUaE05IpzEEKwj2REqVKpLhjfI_shzCkFpoX6RPbilFQyGJGb47FdVr6yXR-Sa-_useuCt0lnWxvwwbs7b_E48cvkct1UGJIVtqGv3Qs_jXxIxk1do-uwGqjrPsT4Idmd2Trg0XYekJufP6bji3Ty6_xyfDZJXc4VS1UlcsGddoJLBbmUlEkttAaYMa2dnAmmVSEAC2R5PMxawJK5uJS6LGzJD8jXTe-qbf71GDqz8MFhXdslNn0wigvFgfE3QSg4UJnLt0GtZaEZRPB0A7q2CaHFmVm1fmHbJwPUDNrM3AxuzODGDNrMVptZx_Dn7S99ucDqf3TrJQLfNsCjr_HpHdXm6u_Zb5AsNqSbBh86XL822PbeSMVVbv5cnZvpRMH3KaXmlj8DUmyy4w</recordid><startdate>200306</startdate><enddate>200306</enddate><creator>SHPYNOV, STANISLAV</creator><creator>FOURNIER, PIERRE-EDOUARD</creator><creator>RUDAKOV, NIKOLAY</creator><creator>RAOULT, DIDIER</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7SS</scope><scope>7X8</scope></search><sort><creationdate>200306</creationdate><title>'Candidatus Rickettsia tarasevichiae' in Ixodes persulcatus Ticks Collected in Russia</title><author>SHPYNOV, STANISLAV ; FOURNIER, PIERRE-EDOUARD ; RUDAKOV, NIKOLAY ; RAOULT, DIDIER</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5372-7d4543c8c43671566026848811f288c6f4287941e9e25573aa1eb2cf2868b9ab3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Animals</topic><topic>Base Sequence</topic><topic>Candidatus Rickettsia tarasevichiae</topic><topic>Citrate (si)-Synthase - genetics</topic><topic>DNA Primers</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Genotype</topic><topic>Geography</topic><topic>Ixodes - microbiology</topic><topic>Ixodes persulcatus</topic><topic>Ixodidae</topic><topic>Phylogeny</topic><topic>Polymerase Chain Reaction</topic><topic>Rickettsia</topic><topic>Rickettsia - classification</topic><topic>Rickettsia - genetics</topic><topic>Rickettsia - isolation & purification</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Russia</topic><topic>Siberia</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>SHPYNOV, STANISLAV</creatorcontrib><creatorcontrib>FOURNIER, PIERRE-EDOUARD</creatorcontrib><creatorcontrib>RUDAKOV, NIKOLAY</creatorcontrib><creatorcontrib>RAOULT, DIDIER</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Entomology Abstracts (Full archive)</collection><collection>MEDLINE - Academic</collection><jtitle>Annals of the New York Academy of Sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>SHPYNOV, STANISLAV</au><au>FOURNIER, PIERRE-EDOUARD</au><au>RUDAKOV, NIKOLAY</au><au>RAOULT, DIDIER</au><au>Raoult, DA (eds)</au><au>Avisic-Zupanc, T</au><au>Childs, JE</au><au>Hechemy, KE</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>'Candidatus Rickettsia tarasevichiae' in Ixodes persulcatus Ticks Collected in Russia</atitle><jtitle>Annals of the New York Academy of Sciences</jtitle><addtitle>Ann N Y Acad Sci</addtitle><date>2003-06</date><risdate>2003</risdate><volume>990</volume><issue>1</issue><spage>162</spage><epage>172</epage><pages>162-172</pages><issn>0077-8923</issn><eissn>1749-6632</eissn><isbn>9781573314442</isbn><isbn>1573314447</isbn><abstract>: We collected 209 Ixodes persulcatus ticks in various regions of Russia, including the southern Urals and western and eastern Siberia. Using PCR amplification and sequencing of the citrate synthase‐encoding gene (gltA), we detected a new rickettsial genotype, which we named ‘Candidatus Rickettsia tarasevichiae.’ This bacterium was found in 9.27%, 10.0%, and 20.5% of the ticks collected in western Siberia, eastern Siberia, and the southern Urals, respectively. ‘Candidatus Rickettsia tarasevichiae’ exhibited a 98% and 96% nucleotide sequence homology, with the 16S rDNA and gltA sequence, respectively, of R. canadensis, a rickettsia previously only found in Haemaphysalis leporispalustris ticks in North America. The phylogenetic analysis of ‘Candidatus Rickettsia tarasevichiae’ and other Rickettsia species allowed the creation of a new cluster with high bootstrap values within the Rickettsia genus involving this rickettsia, R. canadensis, and three uncultured rickettsiae from plant insects.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>12860621</pmid><doi>10.1111/j.1749-6632.2003.tb07358.x</doi><tpages>11</tpages></addata></record> |
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subjects | Animals Base Sequence Candidatus Rickettsia tarasevichiae Citrate (si)-Synthase - genetics DNA Primers DNA, Bacterial - genetics DNA, Ribosomal - genetics Genotype Geography Ixodes - microbiology Ixodes persulcatus Ixodidae Phylogeny Polymerase Chain Reaction Rickettsia Rickettsia - classification Rickettsia - genetics Rickettsia - isolation & purification RNA, Ribosomal, 16S - genetics Russia Siberia |
title | 'Candidatus Rickettsia tarasevichiae' in Ixodes persulcatus Ticks Collected in Russia |
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