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Pseudonocardia rhizophila sp. nov., a novel actinomycete isolated from a rhizosphere soil
During the course of our research on new actinobacterial sources, a novel actinomycete strain YIM 67013T was isolated from rhizosphere soil of Tripterygium wilfordii Hook. f. collected from Yunnan province, south-west China. The strain formed well-differentiated aerial and substrate mycelia, grew in...
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| Published in: | Antonie van Leeuwenhoek 2010-06, Vol.98 (1), p.77-83 |
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| container_title | Antonie van Leeuwenhoek |
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| creator | Li, Jie Zhao, Guo-Zhen Huang, Hai-Yu Zhu, Wen-Yong Lee, Jae-Chan Kim, Chang-Jin Xu, Li-Hua Zhang, Li-Xin Li, Wen-Jun |
| description | During the course of our research on new actinobacterial sources, a novel actinomycete strain YIM 67013T was isolated from rhizosphere soil of Tripterygium wilfordii Hook. f. collected from Yunnan province, south-west China. The strain formed well-differentiated aerial and substrate mycelia, grew in the presence of up to 15% NaCl (optimum, 0-3% NaCl). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM 67013T belongs to the genus Pseudonocardia, with highest similarity to Pseudonocardia thermophila DSM 43832T (97.6%). Sequence similarities between strain YIM 67013T and the other Pseudonocardia species ranged from 96.6 to 93.2%. Key morphological and physiological characteristics as well as chemotaxonomic features of strain YIM 67013T were congruent with the description of the genus Pseudonocardia. The G+C content of the genomic DNA was 69.7 mol%. Based on comparative analysis of physiological, biochemical and chemotaxonomic data, including low DNA-DNA hybridization results, it is proposed that strain YIM 67013T represents a novel species of the genus Pseudonocardia, named Pseudonocardia rhizophila sp. nov. The type strain is YIM 67013T (= CCTCC AA 209043T = DSM 45381T). |
| doi_str_mv | 10.1007/s10482-010-9431-7 |
| format | article |
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The strain formed well-differentiated aerial and substrate mycelia, grew in the presence of up to 15% NaCl (optimum, 0-3% NaCl). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM 67013T belongs to the genus Pseudonocardia, with highest similarity to Pseudonocardia thermophila DSM 43832T (97.6%). Sequence similarities between strain YIM 67013T and the other Pseudonocardia species ranged from 96.6 to 93.2%. Key morphological and physiological characteristics as well as chemotaxonomic features of strain YIM 67013T were congruent with the description of the genus Pseudonocardia. The G+C content of the genomic DNA was 69.7 mol%. Based on comparative analysis of physiological, biochemical and chemotaxonomic data, including low DNA-DNA hybridization results, it is proposed that strain YIM 67013T represents a novel species of the genus Pseudonocardia, named Pseudonocardia rhizophila sp. nov. The type strain is YIM 67013T (= CCTCC AA 209043T = DSM 45381T).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-010-9431-7</identifier><identifier>PMID: 20354787</identifier><identifier>CODEN: ANLEDR</identifier><language>eng</language><publisher>Dordrecht: Dordrecht : Springer Netherlands</publisher><subject>Actinomycetales - classification ; Actinomycetales - genetics ; Actinomycetales - isolation & purification ; Actinomycetales - physiology ; Actinomycetes ; Bacteria ; Bacterial Typing Techniques ; Bacteriology ; Base Composition ; Biological and medical sciences ; Biomedical and Life Sciences ; China ; Cluster Analysis ; Data processing ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Fungi ; Genetics ; genomics ; Life Sciences ; Medical Microbiology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Mycelia ; New species ; Nucleic Acid Hybridization ; Original Paper ; Phylogeny ; Physiology ; Plant Roots - microbiology ; Plant Sciences ; Pseudonocardia ; Rhizosphere ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Sequence Analysis, DNA ; Sodium chloride ; Soil ; Soil Microbiology ; Soil microorganisms ; Soil Science & Conservation</subject><ispartof>Antonie van Leeuwenhoek, 2010-06, Vol.98 (1), p.77-83</ispartof><rights>Springer Science+Business Media B.V. 2010</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c456t-2a1432cc83d29f646f6b34821f62ad7daa9786bff0997f9c2d7c06b049ac8e63</citedby><cites>FETCH-LOGICAL-c456t-2a1432cc83d29f646f6b34821f62ad7daa9786bff0997f9c2d7c06b049ac8e63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22702128$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20354787$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Jie</creatorcontrib><creatorcontrib>Zhao, Guo-Zhen</creatorcontrib><creatorcontrib>Huang, Hai-Yu</creatorcontrib><creatorcontrib>Zhu, Wen-Yong</creatorcontrib><creatorcontrib>Lee, Jae-Chan</creatorcontrib><creatorcontrib>Kim, Chang-Jin</creatorcontrib><creatorcontrib>Xu, Li-Hua</creatorcontrib><creatorcontrib>Zhang, Li-Xin</creatorcontrib><creatorcontrib>Li, Wen-Jun</creatorcontrib><title>Pseudonocardia rhizophila sp. nov., a novel actinomycete isolated from a rhizosphere soil</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>During the course of our research on new actinobacterial sources, a novel actinomycete strain YIM 67013T was isolated from rhizosphere soil of Tripterygium wilfordii Hook. f. collected from Yunnan province, south-west China. The strain formed well-differentiated aerial and substrate mycelia, grew in the presence of up to 15% NaCl (optimum, 0-3% NaCl). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM 67013T belongs to the genus Pseudonocardia, with highest similarity to Pseudonocardia thermophila DSM 43832T (97.6%). Sequence similarities between strain YIM 67013T and the other Pseudonocardia species ranged from 96.6 to 93.2%. Key morphological and physiological characteristics as well as chemotaxonomic features of strain YIM 67013T were congruent with the description of the genus Pseudonocardia. The G+C content of the genomic DNA was 69.7 mol%. Based on comparative analysis of physiological, biochemical and chemotaxonomic data, including low DNA-DNA hybridization results, it is proposed that strain YIM 67013T represents a novel species of the genus Pseudonocardia, named Pseudonocardia rhizophila sp. nov. The type strain is YIM 67013T (= CCTCC AA 209043T = DSM 45381T).</description><subject>Actinomycetales - classification</subject><subject>Actinomycetales - genetics</subject><subject>Actinomycetales - isolation & purification</subject><subject>Actinomycetales - physiology</subject><subject>Actinomycetes</subject><subject>Bacteria</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>China</subject><subject>Cluster Analysis</subject><subject>Data processing</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Fungi</subject><subject>Genetics</subject><subject>genomics</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Mycelia</subject><subject>New species</subject><subject>Nucleic Acid Hybridization</subject><subject>Original Paper</subject><subject>Phylogeny</subject><subject>Physiology</subject><subject>Plant Roots - microbiology</subject><subject>Plant Sciences</subject><subject>Pseudonocardia</subject><subject>Rhizosphere</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Sequence Analysis, DNA</subject><subject>Sodium chloride</subject><subject>Soil</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soil Science & Conservation</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><recordid>eNqFkU-LFDEQxYMo7jj6AbxoEMSLPVaSnqRzXBb_wYKC68FTqEknO1m6O23SLayf3jQ9uuBBT0XI772qxyPkKYMdA1BvMoO64RUwqHQtWKXukQ3bK15pqfV9sgEAUUlQ_Iw8yvmmPLVs1ENyxkHsa9WoDfn2Obu5jUO0mNqANB3DzzgeQ4c0jzs6xB-71xSX6TqKdgpD7G-tmxwNOXY4uZb6FHt6Uubx6JKjOYbuMXngscvuyWluydW7t1cXH6rLT-8_XpxfVrbey6niyGrBrW1Ey7WXtfTyIEoq5iXHVrWIWjXy4D1orby2vFUW5AFqjbZxUmzJq9V2TPH77PJk-pCt6zocXJyzUbXkBRbs_6QQUuwVLOSLv8ibOKehpDBcAFNSy2UxWyGbYs7JeTOm0GO6NQzMUo9Z6zGlHrPUUxZsybOT8XzoXftH8buPArw8AZgtdj7hYEO-47gCznhTOL5yuXwN1y7dXfiv7c9Xkcdo8DoV469feMkLrBFMayl-ASXdr8s</recordid><startdate>20100601</startdate><enddate>20100601</enddate><creator>Li, Jie</creator><creator>Zhao, Guo-Zhen</creator><creator>Huang, Hai-Yu</creator><creator>Zhu, Wen-Yong</creator><creator>Lee, Jae-Chan</creator><creator>Kim, Chang-Jin</creator><creator>Xu, Li-Hua</creator><creator>Zhang, Li-Xin</creator><creator>Li, Wen-Jun</creator><general>Dordrecht : Springer Netherlands</general><general>Springer Netherlands</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>20100601</creationdate><title>Pseudonocardia rhizophila sp. nov., a novel actinomycete isolated from a rhizosphere soil</title><author>Li, Jie ; Zhao, Guo-Zhen ; Huang, Hai-Yu ; Zhu, Wen-Yong ; Lee, Jae-Chan ; Kim, Chang-Jin ; Xu, Li-Hua ; Zhang, Li-Xin ; Li, Wen-Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c456t-2a1432cc83d29f646f6b34821f62ad7daa9786bff0997f9c2d7c06b049ac8e63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Actinomycetales - classification</topic><topic>Actinomycetales - genetics</topic><topic>Actinomycetales - isolation & purification</topic><topic>Actinomycetales - physiology</topic><topic>Actinomycetes</topic><topic>Bacteria</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>China</topic><topic>Cluster Analysis</topic><topic>Data processing</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. 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Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Jie</au><au>Zhao, Guo-Zhen</au><au>Huang, Hai-Yu</au><au>Zhu, Wen-Yong</au><au>Lee, Jae-Chan</au><au>Kim, Chang-Jin</au><au>Xu, Li-Hua</au><au>Zhang, Li-Xin</au><au>Li, Wen-Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Pseudonocardia rhizophila sp. nov., a novel actinomycete isolated from a rhizosphere soil</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2010-06-01</date><risdate>2010</risdate><volume>98</volume><issue>1</issue><spage>77</spage><epage>83</epage><pages>77-83</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><coden>ANLEDR</coden><abstract>During the course of our research on new actinobacterial sources, a novel actinomycete strain YIM 67013T was isolated from rhizosphere soil of Tripterygium wilfordii Hook. f. collected from Yunnan province, south-west China. The strain formed well-differentiated aerial and substrate mycelia, grew in the presence of up to 15% NaCl (optimum, 0-3% NaCl). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM 67013T belongs to the genus Pseudonocardia, with highest similarity to Pseudonocardia thermophila DSM 43832T (97.6%). Sequence similarities between strain YIM 67013T and the other Pseudonocardia species ranged from 96.6 to 93.2%. Key morphological and physiological characteristics as well as chemotaxonomic features of strain YIM 67013T were congruent with the description of the genus Pseudonocardia. The G+C content of the genomic DNA was 69.7 mol%. Based on comparative analysis of physiological, biochemical and chemotaxonomic data, including low DNA-DNA hybridization results, it is proposed that strain YIM 67013T represents a novel species of the genus Pseudonocardia, named Pseudonocardia rhizophila sp. nov. The type strain is YIM 67013T (= CCTCC AA 209043T = DSM 45381T).</abstract><cop>Dordrecht</cop><pub>Dordrecht : Springer Netherlands</pub><pmid>20354787</pmid><doi>10.1007/s10482-010-9431-7</doi><tpages>7</tpages></addata></record> |
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| subjects | Actinomycetales - classification Actinomycetales - genetics Actinomycetales - isolation & purification Actinomycetales - physiology Actinomycetes Bacteria Bacterial Typing Techniques Bacteriology Base Composition Biological and medical sciences Biomedical and Life Sciences China Cluster Analysis Data processing Deoxyribonucleic acid DNA DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Fungi Genetics genomics Life Sciences Medical Microbiology Microbiology Miscellaneous Molecular Sequence Data Mycelia New species Nucleic Acid Hybridization Original Paper Phylogeny Physiology Plant Roots - microbiology Plant Sciences Pseudonocardia Rhizosphere RNA, Ribosomal, 16S - genetics rRNA 16S Sequence Analysis, DNA Sodium chloride Soil Soil Microbiology Soil microorganisms Soil Science & Conservation |
| title | Pseudonocardia rhizophila sp. nov., a novel actinomycete isolated from a rhizosphere soil |
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