The earthworm Expressed Sequence Tag project

This paper aims to provide a brief description of the earthworm Expressed Sequence Tag (EST) project. ESTs are short single read sequences randomly derived from cDNA libraries and provide the means to acquire large scale sequence information of coding DNA. The earthworm EST project is growing rapidl...

Full description

Saved in:
Bibliographic Details
Published in:Pedobiologia 2003-01, Vol.47 (5), p.447-451
Main Authors: Stürzenbaum, Stephen R., Parkinson, John, Blaxter, Mark, Morgan, A.John, Kille, Peter, Georgiev, Oleg
Format: Article
Language:English
Subjects:
earthworm
EST
Expressed Sequence Tag
sequencing project
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c350t-b14a8f024a7d0335e8d9fb36c4ecaecf6608b32fb3bd3c45a119f738e07546703
cites cdi_FETCH-LOGICAL-c350t-b14a8f024a7d0335e8d9fb36c4ecaecf6608b32fb3bd3c45a119f738e07546703
container_end_page 451
container_issue 5
container_start_page 447
container_title Pedobiologia
container_volume 47
creator Stürzenbaum, Stephen R.
Parkinson, John
Blaxter, Mark
Morgan, A.John
Kille, Peter
Georgiev, Oleg
description This paper aims to provide a brief description of the earthworm Expressed Sequence Tag (EST) project. ESTs are short single read sequences randomly derived from cDNA libraries and provide the means to acquire large scale sequence information of coding DNA. The earthworm EST project is growing rapidly and the analysis of the first 577 sequences corresponded to ∼ 400 different genes, with 79 represented by two or more ESTs. Significant sequence similarity to known proteins was observed in 76% of cases and the remaining 24% were classified as novel genes. Using a combination of bioinformatic tools the sequence information was used to build a relational database, LumbriBASE, which can be queried via an internet interface by sequence similarity and key word searches (see http://www.earthworms.org).
doi_str_mv 10.1078/0031-4056-00211
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_754875328</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0031405604702206</els_id><sourcerecordid>754875328</sourcerecordid><originalsourceid>FETCH-LOGICAL-c350t-b14a8f024a7d0335e8d9fb36c4ecaecf6608b32fb3bd3c45a119f738e07546703</originalsourceid><addsrcrecordid>eNp1kLtPwzAQhy0EEqUws0YsLITexXbsjKgqD6kSA2W2HOdCU7VNsRMe_z0ORQxITJbO3-8eH2PnCNcISk8AOKYCZJ4CZIgHbIRa8RQl4iEb_f4es5MQVgAoCsVH7GqxpISs75bvrd8ks4-dpxCoSp7otaeto2RhX5Kdb1fkulN2VNt1oLOfd8yeb2eL6X06f7x7mN7MU8cldGmJwuoaMmFVBZxL0lVRlzx3gpwlV-c56JJnsVRW3AlpEYtacU2gpMgV8DG73PeNc-MWoTObJjhar-2W2j6YiGkleaYjefGHXLW938blTBa7cUSZRWiyh5xvQ_BUm51vNtZ_GgQzuDODHTPYMd_uYqLYJyhe-daQN8E1g42q8dGDqdrm3-wXqGpxRQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>207531152</pqid></control><display><type>article</type><title>The earthworm Expressed Sequence Tag project</title><source>ScienceDirect Journals</source><creator>Stürzenbaum, Stephen R. ; Parkinson, John ; Blaxter, Mark ; Morgan, A.John ; Kille, Peter ; Georgiev, Oleg</creator><creatorcontrib>Stürzenbaum, Stephen R. ; Parkinson, John ; Blaxter, Mark ; Morgan, A.John ; Kille, Peter ; Georgiev, Oleg</creatorcontrib><description>This paper aims to provide a brief description of the earthworm Expressed Sequence Tag (EST) project. ESTs are short single read sequences randomly derived from cDNA libraries and provide the means to acquire large scale sequence information of coding DNA. The earthworm EST project is growing rapidly and the analysis of the first 577 sequences corresponded to ∼ 400 different genes, with 79 represented by two or more ESTs. Significant sequence similarity to known proteins was observed in 76% of cases and the remaining 24% were classified as novel genes. Using a combination of bioinformatic tools the sequence information was used to build a relational database, LumbriBASE, which can be queried via an internet interface by sequence similarity and key word searches (see http://www.earthworms.org).</description><identifier>ISSN: 0031-4056</identifier><identifier>EISSN: 1873-1511</identifier><identifier>DOI: 10.1078/0031-4056-00211</identifier><language>eng</language><publisher>Jena: Elsevier GmbH</publisher><subject>earthworm ; EST ; Expressed Sequence Tag ; sequencing project</subject><ispartof>Pedobiologia, 2003-01, Vol.47 (5), p.447-451</ispartof><rights>2004 Urban &amp; Fischer Verlag</rights><rights>Copyright Urban &amp; Fischer Verlag 2003</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c350t-b14a8f024a7d0335e8d9fb36c4ecaecf6608b32fb3bd3c45a119f738e07546703</citedby><cites>FETCH-LOGICAL-c350t-b14a8f024a7d0335e8d9fb36c4ecaecf6608b32fb3bd3c45a119f738e07546703</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Stürzenbaum, Stephen R.</creatorcontrib><creatorcontrib>Parkinson, John</creatorcontrib><creatorcontrib>Blaxter, Mark</creatorcontrib><creatorcontrib>Morgan, A.John</creatorcontrib><creatorcontrib>Kille, Peter</creatorcontrib><creatorcontrib>Georgiev, Oleg</creatorcontrib><title>The earthworm Expressed Sequence Tag project</title><title>Pedobiologia</title><description>This paper aims to provide a brief description of the earthworm Expressed Sequence Tag (EST) project. ESTs are short single read sequences randomly derived from cDNA libraries and provide the means to acquire large scale sequence information of coding DNA. The earthworm EST project is growing rapidly and the analysis of the first 577 sequences corresponded to ∼ 400 different genes, with 79 represented by two or more ESTs. Significant sequence similarity to known proteins was observed in 76% of cases and the remaining 24% were classified as novel genes. Using a combination of bioinformatic tools the sequence information was used to build a relational database, LumbriBASE, which can be queried via an internet interface by sequence similarity and key word searches (see http://www.earthworms.org).</description><subject>earthworm</subject><subject>EST</subject><subject>Expressed Sequence Tag</subject><subject>sequencing project</subject><issn>0031-4056</issn><issn>1873-1511</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><recordid>eNp1kLtPwzAQhy0EEqUws0YsLITexXbsjKgqD6kSA2W2HOdCU7VNsRMe_z0ORQxITJbO3-8eH2PnCNcISk8AOKYCZJ4CZIgHbIRa8RQl4iEb_f4es5MQVgAoCsVH7GqxpISs75bvrd8ks4-dpxCoSp7otaeto2RhX5Kdb1fkulN2VNt1oLOfd8yeb2eL6X06f7x7mN7MU8cldGmJwuoaMmFVBZxL0lVRlzx3gpwlV-c56JJnsVRW3AlpEYtacU2gpMgV8DG73PeNc-MWoTObJjhar-2W2j6YiGkleaYjefGHXLW938blTBa7cUSZRWiyh5xvQ_BUm51vNtZ_GgQzuDODHTPYMd_uYqLYJyhe-daQN8E1g42q8dGDqdrm3-wXqGpxRQ</recordid><startdate>20030101</startdate><enddate>20030101</enddate><creator>Stürzenbaum, Stephen R.</creator><creator>Parkinson, John</creator><creator>Blaxter, Mark</creator><creator>Morgan, A.John</creator><creator>Kille, Peter</creator><creator>Georgiev, Oleg</creator><general>Elsevier GmbH</general><general>Elsevier Science Ltd</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88I</scope><scope>8AF</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>S0X</scope><scope>RC3</scope></search><sort><creationdate>20030101</creationdate><title>The earthworm Expressed Sequence Tag project</title><author>Stürzenbaum, Stephen R. ; Parkinson, John ; Blaxter, Mark ; Morgan, A.John ; Kille, Peter ; Georgiev, Oleg</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c350t-b14a8f024a7d0335e8d9fb36c4ecaecf6608b32fb3bd3c45a119f738e07546703</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>earthworm</topic><topic>EST</topic><topic>Expressed Sequence Tag</topic><topic>sequencing project</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Stürzenbaum, Stephen R.</creatorcontrib><creatorcontrib>Parkinson, John</creatorcontrib><creatorcontrib>Blaxter, Mark</creatorcontrib><creatorcontrib>Morgan, A.John</creatorcontrib><creatorcontrib>Kille, Peter</creatorcontrib><creatorcontrib>Georgiev, Oleg</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest_Health &amp; Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>STEM Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science &amp; Engineering Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Agricultural &amp; Environmental Science Collection</collection><collection>ProQuest Central</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agriculture Science Database</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest Science Journals</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>SIRS Editorial</collection><collection>Genetics Abstracts</collection><jtitle>Pedobiologia</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Stürzenbaum, Stephen R.</au><au>Parkinson, John</au><au>Blaxter, Mark</au><au>Morgan, A.John</au><au>Kille, Peter</au><au>Georgiev, Oleg</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The earthworm Expressed Sequence Tag project</atitle><jtitle>Pedobiologia</jtitle><date>2003-01-01</date><risdate>2003</risdate><volume>47</volume><issue>5</issue><spage>447</spage><epage>451</epage><pages>447-451</pages><issn>0031-4056</issn><eissn>1873-1511</eissn><abstract>This paper aims to provide a brief description of the earthworm Expressed Sequence Tag (EST) project. ESTs are short single read sequences randomly derived from cDNA libraries and provide the means to acquire large scale sequence information of coding DNA. The earthworm EST project is growing rapidly and the analysis of the first 577 sequences corresponded to ∼ 400 different genes, with 79 represented by two or more ESTs. Significant sequence similarity to known proteins was observed in 76% of cases and the remaining 24% were classified as novel genes. Using a combination of bioinformatic tools the sequence information was used to build a relational database, LumbriBASE, which can be queried via an internet interface by sequence similarity and key word searches (see http://www.earthworms.org).</abstract><cop>Jena</cop><pub>Elsevier GmbH</pub><doi>10.1078/0031-4056-00211</doi><tpages>5</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0031-4056
ispartof Pedobiologia, 2003-01, Vol.47 (5), p.447-451
issn 0031-4056
1873-1511
language eng
recordid cdi_proquest_miscellaneous_754875328
source ScienceDirect Journals
subjects earthworm
EST
Expressed Sequence Tag
sequencing project
title The earthworm Expressed Sequence Tag project
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-05T06%3A29%3A53IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20earthworm%20Expressed%20Sequence%20Tag%20project&rft.jtitle=Pedobiologia&rft.au=St%C3%BCrzenbaum,%20Stephen%20R.&rft.date=2003-01-01&rft.volume=47&rft.issue=5&rft.spage=447&rft.epage=451&rft.pages=447-451&rft.issn=0031-4056&rft.eissn=1873-1511&rft_id=info:doi/10.1078/0031-4056-00211&rft_dat=%3Cproquest_cross%3E754875328%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c350t-b14a8f024a7d0335e8d9fb36c4ecaecf6608b32fb3bd3c45a119f738e07546703%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=207531152&rft_id=info:pmid/&rfr_iscdi=true