Real-time polymerase chain reaction assays for the detection of members of the Mycoplasma mycoides cluster

• Published in: New Zealand veterinary journal 2008-02, Vol.56 (1), p.40-47
• Main Authors: Fitzmaurice, J, Sewell, M, Manso-Silván, L, Thiaucourt, F, McDonald, WL, O'Keefe, JS
• Format: Article
• Language: English
• Subjects: Agriculture; Animals; Cattle; Cluster Analysis; Colony Count, Microbial - veterinary; diagnostic assays; Diagnostic use; DNA, Bacterial - chemistry; DNA, Bacterial - genetics; Goats; Life Sciences; Microbiological assay; Milk - microbiology; Mycoplasma; Mycoplasma diseases in animals; Mycoplasma mycoides; Mycoplasma mycoides - classification; Mycoplasma mycoides - isolation & purification; Mycoplasma mycoides cluster; Polymerase chain reaction; Polymerase Chain Reaction - methods; Polymerase Chain Reaction - standards; Polymerase Chain Reaction - veterinary; real-time PCR; Sensitivity and Specificity; Sheep; Species Specificity; Veterinary medicine
• ISSN: 0048-0169; 1176-0710; 1176-0710
• DOI: 10.1080/00480169.2008.36803

AIM: To develop real-time PCR assays for the detection and differentiation of members of the Mycoplasma mycoides cluster. METHODS: Five real-time PCR assays were designed to allow differentiation of members of the M. mycoides cluster: an assay for detection of the M. mycoides subspecies, viz M. mycoides subsp mycoides large colony (MmmLC), M. mycoides subsp capri (Mmc), and M. mycoides subsp mycoides small colony (MmmSC); one for the detection of the M. capricolum subspecies, viz M. capricolum subsp capricolum (Mcc), M. capricolum subsp capripneumoniae (Mccp), and Mycoplasma sp bovine group 7 (BG7); and three for the specifi c detection of MmmSC, Mccp, and BG7. A panel of 74 Mycoplasma isolates from various geographical origins and a panel of 21 other bacterial isolates were used to evaluate the sensitivity and specificity of the assays. RESULTS: The assays displayed 100% analytical sensitivity in detecting all target Mycoplasma isolates. The analytical detection limit for the assays to detect the M. mycoides subspecies, M. capricolum subspecies, and MmmSC was determined to be 100 fg of genomic DNA, while the Mccp and BG7 assays had a detection limit of 100 fg and 10 fg of genomic DNA, respectively. The M. mycoides subspecies assay had a detection limit of 10 3 (SD 10 2 ) cfu/ml milk, 10 4 (SD 10 4 ) cfu per swab, and 10 3 (SD 10 3 ) cfu/g lung in inoculated samples. The assays displayed 100% specificity when applied to non-target bacterial isolates and to 110 culture-negative milk samples. CONCLUSIONS: The assays were highly sensitive and specific, and provide accurate detection and differentiation of the members of the M. mycoides cluster.