Loading…

Fast live simultaneous multiwavelength four-dimensional optical microscopy

Live fluorescence microscopy has the unique capability to probe dynamic processes, linking molecular components and their localization with function. A key goal of microscopy is to increase spatial and temporal resolution while simultaneously permitting identification of multiple specific components...

Full description

Saved in:
Bibliographic Details
Published in:Proceedings of the National Academy of Sciences - PNAS 2010-09, Vol.107 (37), p.16016-16022
Main Authors: Carlton, Peter M., Boulanger, Jérôme, Kervrann, Charles, Sibarita, Jean-Baptiste, Salamero, Jean, Gordon-Messer, Susannah, Bressan, Debra, Haber, James E., Haase, Sebastian, Shao, Lin, Winoto, Lukman, Matsuda, Atsushi, Kner, Peter, Uzawa, Satoru, Gustafsson, Mats, Kam, Zvi, Agard, David A., Sedat, John W.
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c568t-2de5429503a9f9896ccc2c23fc1b77a4fd55c52c2b1c708a8aa1ba61e9c14ee43
cites cdi_FETCH-LOGICAL-c568t-2de5429503a9f9896ccc2c23fc1b77a4fd55c52c2b1c708a8aa1ba61e9c14ee43
container_end_page 16022
container_issue 37
container_start_page 16016
container_title Proceedings of the National Academy of Sciences - PNAS
container_volume 107
creator Carlton, Peter M.
Boulanger, Jérôme
Kervrann, Charles
Sibarita, Jean-Baptiste
Salamero, Jean
Gordon-Messer, Susannah
Bressan, Debra
Haber, James E.
Haase, Sebastian
Shao, Lin
Winoto, Lukman
Matsuda, Atsushi
Kner, Peter
Uzawa, Satoru
Gustafsson, Mats
Kam, Zvi
Agard, David A.
Sedat, John W.
description Live fluorescence microscopy has the unique capability to probe dynamic processes, linking molecular components and their localization with function. A key goal of microscopy is to increase spatial and temporal resolution while simultaneously permitting identification of multiple specific components. We demonstrate a new microscope platform, OMX, that enables subsecond, multicolor four-dimensional data acquisition and also provides access to sub-diffraction structured illumination imaging. Using this platform to image chromosome movement during a complete yeast cell cycle at one 3D image stack per second reveals an unexpected degree of photosensitivity of fluorophore-containing cells. To avoid perturbation of cell division, excitation levels had to be attenuated between 100 and 10,000× below the level normally used for imaging. We show that an image denoising algorithm that exploits redundancy in the image sequence over space and time allows recovery of biological information from the low light level noisy images while maintaining full cell viability with no fading.
doi_str_mv 10.1073/pnas.1004037107
format article
fullrecord <record><control><sourceid>jstor_proqu</sourceid><recordid>TN_cdi_proquest_miscellaneous_755159982</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><jstor_id>20779608</jstor_id><sourcerecordid>20779608</sourcerecordid><originalsourceid>FETCH-LOGICAL-c568t-2de5429503a9f9896ccc2c23fc1b77a4fd55c52c2b1c708a8aa1ba61e9c14ee43</originalsourceid><addsrcrecordid>eNpdkc1P3DAQxa2Kqiy0555AUS8cUMr4K7YvSAjx0WqlXtqz5fU6rFdJHOxkK_57HGULlNOMxr95tt9D6CuG7xgEveg7k3IHDKjIgw9ogUHhsmIKDtACgIhSMsIO0VFKWwBQXMIndEhAAJdKLdDPW5OGovE7VyTfjs1gOhfGVEyt_2t2rnHdw7Ap6jDGcu1b1yUfOtMUoR-8zbX1NoZkQ__0GX2sTZPcl309Rn9ub35f35fLX3c_rq-WpeWVHEqydpwRxYEaVSupKmstsYTWFq-EMKxec255nqywFSCNNAavTIWdspg5x-gxupx1-3HVurV13RBNo_voWxOfdDBe_3_S-Y1-CDtNFMOU4ixwPgts3q3dXy2176I3GoAzUELuJvpsf10Mj6NLg259sq5pZqe04BxzpSTJ5Ld35Da7ls2aIMywYFRl6GKGJttSdPXLCzDoKVM9ZapfM80bp2__-8L_CzEDxR6YNl_lhKZC4wpwlZGTGdmmIcS3EkJVIOkzs6Sy7g</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>751417439</pqid></control><display><type>article</type><title>Fast live simultaneous multiwavelength four-dimensional optical microscopy</title><source>JSTOR Archival Journals and Primary Sources Collection</source><source>PubMed Central</source><creator>Carlton, Peter M. ; Boulanger, Jérôme ; Kervrann, Charles ; Sibarita, Jean-Baptiste ; Salamero, Jean ; Gordon-Messer, Susannah ; Bressan, Debra ; Haber, James E. ; Haase, Sebastian ; Shao, Lin ; Winoto, Lukman ; Matsuda, Atsushi ; Kner, Peter ; Uzawa, Satoru ; Gustafsson, Mats ; Kam, Zvi ; Agard, David A. ; Sedat, John W.</creator><creatorcontrib>Carlton, Peter M. ; Boulanger, Jérôme ; Kervrann, Charles ; Sibarita, Jean-Baptiste ; Salamero, Jean ; Gordon-Messer, Susannah ; Bressan, Debra ; Haber, James E. ; Haase, Sebastian ; Shao, Lin ; Winoto, Lukman ; Matsuda, Atsushi ; Kner, Peter ; Uzawa, Satoru ; Gustafsson, Mats ; Kam, Zvi ; Agard, David A. ; Sedat, John W.</creatorcontrib><description>Live fluorescence microscopy has the unique capability to probe dynamic processes, linking molecular components and their localization with function. A key goal of microscopy is to increase spatial and temporal resolution while simultaneously permitting identification of multiple specific components. We demonstrate a new microscope platform, OMX, that enables subsecond, multicolor four-dimensional data acquisition and also provides access to sub-diffraction structured illumination imaging. Using this platform to image chromosome movement during a complete yeast cell cycle at one 3D image stack per second reveals an unexpected degree of photosensitivity of fluorophore-containing cells. To avoid perturbation of cell division, excitation levels had to be attenuated between 100 and 10,000× below the level normally used for imaging. We show that an image denoising algorithm that exploits redundancy in the image sequence over space and time allows recovery of biological information from the low light level noisy images while maintaining full cell viability with no fading.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.1004037107</identifier><identifier>PMID: 20705899</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Algorithms ; Animals ; Biological Sciences ; Cell cycle ; Cell division ; Cell Survival ; Cellular Biology ; Chromosomes ; Computer Science ; Drosophila melanogaster - cytology ; Fluorescence ; Image Processing ; Imaging ; Life Sciences ; Luminous intensity ; Microscopy ; Microscopy, Fluorescence - methods ; Optics ; Phototoxicity ; Physics ; Saccharomyces cerevisiae - cytology ; Signal noise ; Software ; Viability ; Yeast ; Yeasts</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2010-09, Vol.107 (37), p.16016-16022</ispartof><rights>Copyright National Academy of Sciences Sep 14, 2010</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c568t-2de5429503a9f9896ccc2c23fc1b77a4fd55c52c2b1c708a8aa1ba61e9c14ee43</citedby><cites>FETCH-LOGICAL-c568t-2de5429503a9f9896ccc2c23fc1b77a4fd55c52c2b1c708a8aa1ba61e9c14ee43</cites><orcidid>0000-0001-6263-0452</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/107/37.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/20779608$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/20779608$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793,58238,58471</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20705899$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://inria.hal.science/inria-00540978$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Carlton, Peter M.</creatorcontrib><creatorcontrib>Boulanger, Jérôme</creatorcontrib><creatorcontrib>Kervrann, Charles</creatorcontrib><creatorcontrib>Sibarita, Jean-Baptiste</creatorcontrib><creatorcontrib>Salamero, Jean</creatorcontrib><creatorcontrib>Gordon-Messer, Susannah</creatorcontrib><creatorcontrib>Bressan, Debra</creatorcontrib><creatorcontrib>Haber, James E.</creatorcontrib><creatorcontrib>Haase, Sebastian</creatorcontrib><creatorcontrib>Shao, Lin</creatorcontrib><creatorcontrib>Winoto, Lukman</creatorcontrib><creatorcontrib>Matsuda, Atsushi</creatorcontrib><creatorcontrib>Kner, Peter</creatorcontrib><creatorcontrib>Uzawa, Satoru</creatorcontrib><creatorcontrib>Gustafsson, Mats</creatorcontrib><creatorcontrib>Kam, Zvi</creatorcontrib><creatorcontrib>Agard, David A.</creatorcontrib><creatorcontrib>Sedat, John W.</creatorcontrib><title>Fast live simultaneous multiwavelength four-dimensional optical microscopy</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Live fluorescence microscopy has the unique capability to probe dynamic processes, linking molecular components and their localization with function. A key goal of microscopy is to increase spatial and temporal resolution while simultaneously permitting identification of multiple specific components. We demonstrate a new microscope platform, OMX, that enables subsecond, multicolor four-dimensional data acquisition and also provides access to sub-diffraction structured illumination imaging. Using this platform to image chromosome movement during a complete yeast cell cycle at one 3D image stack per second reveals an unexpected degree of photosensitivity of fluorophore-containing cells. To avoid perturbation of cell division, excitation levels had to be attenuated between 100 and 10,000× below the level normally used for imaging. We show that an image denoising algorithm that exploits redundancy in the image sequence over space and time allows recovery of biological information from the low light level noisy images while maintaining full cell viability with no fading.</description><subject>Algorithms</subject><subject>Animals</subject><subject>Biological Sciences</subject><subject>Cell cycle</subject><subject>Cell division</subject><subject>Cell Survival</subject><subject>Cellular Biology</subject><subject>Chromosomes</subject><subject>Computer Science</subject><subject>Drosophila melanogaster - cytology</subject><subject>Fluorescence</subject><subject>Image Processing</subject><subject>Imaging</subject><subject>Life Sciences</subject><subject>Luminous intensity</subject><subject>Microscopy</subject><subject>Microscopy, Fluorescence - methods</subject><subject>Optics</subject><subject>Phototoxicity</subject><subject>Physics</subject><subject>Saccharomyces cerevisiae - cytology</subject><subject>Signal noise</subject><subject>Software</subject><subject>Viability</subject><subject>Yeast</subject><subject>Yeasts</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><recordid>eNpdkc1P3DAQxa2Kqiy0555AUS8cUMr4K7YvSAjx0WqlXtqz5fU6rFdJHOxkK_57HGULlNOMxr95tt9D6CuG7xgEveg7k3IHDKjIgw9ogUHhsmIKDtACgIhSMsIO0VFKWwBQXMIndEhAAJdKLdDPW5OGovE7VyTfjs1gOhfGVEyt_2t2rnHdw7Ap6jDGcu1b1yUfOtMUoR-8zbX1NoZkQ__0GX2sTZPcl309Rn9ub35f35fLX3c_rq-WpeWVHEqydpwRxYEaVSupKmstsYTWFq-EMKxec255nqywFSCNNAavTIWdspg5x-gxupx1-3HVurV13RBNo_voWxOfdDBe_3_S-Y1-CDtNFMOU4ixwPgts3q3dXy2176I3GoAzUELuJvpsf10Mj6NLg259sq5pZqe04BxzpSTJ5Ld35Da7ls2aIMywYFRl6GKGJttSdPXLCzDoKVM9ZapfM80bp2__-8L_CzEDxR6YNl_lhKZC4wpwlZGTGdmmIcS3EkJVIOkzs6Sy7g</recordid><startdate>20100914</startdate><enddate>20100914</enddate><creator>Carlton, Peter M.</creator><creator>Boulanger, Jérôme</creator><creator>Kervrann, Charles</creator><creator>Sibarita, Jean-Baptiste</creator><creator>Salamero, Jean</creator><creator>Gordon-Messer, Susannah</creator><creator>Bressan, Debra</creator><creator>Haber, James E.</creator><creator>Haase, Sebastian</creator><creator>Shao, Lin</creator><creator>Winoto, Lukman</creator><creator>Matsuda, Atsushi</creator><creator>Kner, Peter</creator><creator>Uzawa, Satoru</creator><creator>Gustafsson, Mats</creator><creator>Kam, Zvi</creator><creator>Agard, David A.</creator><creator>Sedat, John W.</creator><general>National Academy of Sciences</general><general>National Acad Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-6263-0452</orcidid></search><sort><creationdate>20100914</creationdate><title>Fast live simultaneous multiwavelength four-dimensional optical microscopy</title><author>Carlton, Peter M. ; Boulanger, Jérôme ; Kervrann, Charles ; Sibarita, Jean-Baptiste ; Salamero, Jean ; Gordon-Messer, Susannah ; Bressan, Debra ; Haber, James E. ; Haase, Sebastian ; Shao, Lin ; Winoto, Lukman ; Matsuda, Atsushi ; Kner, Peter ; Uzawa, Satoru ; Gustafsson, Mats ; Kam, Zvi ; Agard, David A. ; Sedat, John W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c568t-2de5429503a9f9896ccc2c23fc1b77a4fd55c52c2b1c708a8aa1ba61e9c14ee43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Algorithms</topic><topic>Animals</topic><topic>Biological Sciences</topic><topic>Cell cycle</topic><topic>Cell division</topic><topic>Cell Survival</topic><topic>Cellular Biology</topic><topic>Chromosomes</topic><topic>Computer Science</topic><topic>Drosophila melanogaster - cytology</topic><topic>Fluorescence</topic><topic>Image Processing</topic><topic>Imaging</topic><topic>Life Sciences</topic><topic>Luminous intensity</topic><topic>Microscopy</topic><topic>Microscopy, Fluorescence - methods</topic><topic>Optics</topic><topic>Phototoxicity</topic><topic>Physics</topic><topic>Saccharomyces cerevisiae - cytology</topic><topic>Signal noise</topic><topic>Software</topic><topic>Viability</topic><topic>Yeast</topic><topic>Yeasts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Carlton, Peter M.</creatorcontrib><creatorcontrib>Boulanger, Jérôme</creatorcontrib><creatorcontrib>Kervrann, Charles</creatorcontrib><creatorcontrib>Sibarita, Jean-Baptiste</creatorcontrib><creatorcontrib>Salamero, Jean</creatorcontrib><creatorcontrib>Gordon-Messer, Susannah</creatorcontrib><creatorcontrib>Bressan, Debra</creatorcontrib><creatorcontrib>Haber, James E.</creatorcontrib><creatorcontrib>Haase, Sebastian</creatorcontrib><creatorcontrib>Shao, Lin</creatorcontrib><creatorcontrib>Winoto, Lukman</creatorcontrib><creatorcontrib>Matsuda, Atsushi</creatorcontrib><creatorcontrib>Kner, Peter</creatorcontrib><creatorcontrib>Uzawa, Satoru</creatorcontrib><creatorcontrib>Gustafsson, Mats</creatorcontrib><creatorcontrib>Kam, Zvi</creatorcontrib><creatorcontrib>Agard, David A.</creatorcontrib><creatorcontrib>Sedat, John W.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Carlton, Peter M.</au><au>Boulanger, Jérôme</au><au>Kervrann, Charles</au><au>Sibarita, Jean-Baptiste</au><au>Salamero, Jean</au><au>Gordon-Messer, Susannah</au><au>Bressan, Debra</au><au>Haber, James E.</au><au>Haase, Sebastian</au><au>Shao, Lin</au><au>Winoto, Lukman</au><au>Matsuda, Atsushi</au><au>Kner, Peter</au><au>Uzawa, Satoru</au><au>Gustafsson, Mats</au><au>Kam, Zvi</au><au>Agard, David A.</au><au>Sedat, John W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fast live simultaneous multiwavelength four-dimensional optical microscopy</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2010-09-14</date><risdate>2010</risdate><volume>107</volume><issue>37</issue><spage>16016</spage><epage>16022</epage><pages>16016-16022</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>Live fluorescence microscopy has the unique capability to probe dynamic processes, linking molecular components and their localization with function. A key goal of microscopy is to increase spatial and temporal resolution while simultaneously permitting identification of multiple specific components. We demonstrate a new microscope platform, OMX, that enables subsecond, multicolor four-dimensional data acquisition and also provides access to sub-diffraction structured illumination imaging. Using this platform to image chromosome movement during a complete yeast cell cycle at one 3D image stack per second reveals an unexpected degree of photosensitivity of fluorophore-containing cells. To avoid perturbation of cell division, excitation levels had to be attenuated between 100 and 10,000× below the level normally used for imaging. We show that an image denoising algorithm that exploits redundancy in the image sequence over space and time allows recovery of biological information from the low light level noisy images while maintaining full cell viability with no fading.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>20705899</pmid><doi>10.1073/pnas.1004037107</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0001-6263-0452</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0027-8424
ispartof Proceedings of the National Academy of Sciences - PNAS, 2010-09, Vol.107 (37), p.16016-16022
issn 0027-8424
1091-6490
language eng
recordid cdi_proquest_miscellaneous_755159982
source JSTOR Archival Journals and Primary Sources Collection; PubMed Central
subjects Algorithms
Animals
Biological Sciences
Cell cycle
Cell division
Cell Survival
Cellular Biology
Chromosomes
Computer Science
Drosophila melanogaster - cytology
Fluorescence
Image Processing
Imaging
Life Sciences
Luminous intensity
Microscopy
Microscopy, Fluorescence - methods
Optics
Phototoxicity
Physics
Saccharomyces cerevisiae - cytology
Signal noise
Software
Viability
Yeast
Yeasts
title Fast live simultaneous multiwavelength four-dimensional optical microscopy
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-07T16%3A47%3A39IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-jstor_proqu&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Fast%20live%20simultaneous%20multiwavelength%20four-dimensional%20optical%20microscopy&rft.jtitle=Proceedings%20of%20the%20National%20Academy%20of%20Sciences%20-%20PNAS&rft.au=Carlton,%20Peter%20M.&rft.date=2010-09-14&rft.volume=107&rft.issue=37&rft.spage=16016&rft.epage=16022&rft.pages=16016-16022&rft.issn=0027-8424&rft.eissn=1091-6490&rft_id=info:doi/10.1073/pnas.1004037107&rft_dat=%3Cjstor_proqu%3E20779608%3C/jstor_proqu%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c568t-2de5429503a9f9896ccc2c23fc1b77a4fd55c52c2b1c708a8aa1ba61e9c14ee43%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=751417439&rft_id=info:pmid/20705899&rft_jstor_id=20779608&rfr_iscdi=true