Molecular characterization of Macrophomina phaseolina and Fusarium species by a single primer RAPD technique

• Published in: Microbiological research 2003-01, Vol.158 (3), p.249-257
• Main Authors: Jana, Tarakanta, Sharma, Tilak R., Prasad, Ravulpalli D., Arora, Dilip K.
• Format: Article
• Language: English
• Subjects: Basidiomycota - classification; Basidiomycota - genetics; Basidiomycota - isolation & purification; Biological and medical sciences; DNA Fingerprinting - methods; DNA Primers; Fundamental and applied biological sciences. Psychology; Fusarium - classification; Fusarium - genetics; Fusarium - isolation & purification; Fusarium oxysporum; Genetic Variation; Genome, Fungal; genomic fingerprinting; Macrophomina phaseolina; Microbiology; Mycological Typing Techniques - methods; Mycology; Pathogenicity, host-agent relations, miscellaneous strains, epidemiology; Polymerase Chain Reaction; Polymorphism, Genetic; Random Amplified Polymorphic DNA Technique; single arbitrary primer
• ISSN: 0944-5013; 1618-0623
• DOI: 10.1078/0944-5013-00198

Charcoal root rot and wilt, are two economically important diseases of many crop plants in North and South America, Asia and Africa and some parts of Europe. Genetic variation in 43 isolates of Macrophomina phaseolina and 22 isolates of Fusarium species, collected from geographically distinct regions over a range of hosts, was studied using random amplified polymorphic DNA (RAPD) markers. Initially, 210 arbitrary nucleotide (10-mer) primers were tested for amplification of genomic DNA of one M. phaseolina isolate, 70 primers amplified the genomic DNA of M. phaseolina. One primer OPA-13 (5’-CAGCACCCAC-3’) produced fingerprint profiles, which clearly distinguished between the different isolates of M. phaseolina. UPGMA analysis classified these isolates into five major groups. By primer OPA-13, 22 isolates of pathogenic and non-pathogenic Fusarium species of different formae-speciales and races, were also distinguished from M. phaseolina. This marker is useful for distinguishing between these two important plant pathogens irrespective of hosts, virulence spectrum and races. This is the first report of reliable diagnosis of two soilborne pathogens (root/collar rot and wilt causing pathogens) at the level of isolates, formae-speciales and races by a single primer RAPD procedure with uniform PCR conditions.