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Micro-CT based quantitative evaluation of caries excavation
Abstract Objectives To optimize a microtomographic (micro-CT) technique to quantitatively evaluate the effectiveness of contemporary caries-excavation techniques. Methods A beam-hardening curve was obtained from an initial reconstruction of a wedge-shaped hydroxyapatite (HAp) block and fitted with a...
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Published in: | Dental materials 2010-06, Vol.26 (6), p.579-588 |
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description | Abstract Objectives To optimize a microtomographic (micro-CT) technique to quantitatively evaluate the effectiveness of contemporary caries-excavation techniques. Methods A beam-hardening curve was obtained from an initial reconstruction of a wedge-shaped hydroxyapatite (HAp) block and fitted with a 5th order polynomial function, after which each micro-CT tooth slice was corrected accordingly. Calibration of the 8-bit gray values into mineral-density values was obtained by scanning, reconstructing and processing volume of interests (VOIs) of HAp phantoms with different mineral densities (0.25, 0.75, 3.14 g/cm3 ). One carious tooth was scanned before and after caries removal with an experimental enzyme-based gel. After reconstruction, a 3D-median filter was applied to each micro-CT slice, and a connected threshold grower algorithm was used to blank-out undesired structures in each slice. Volume rendering with a look-up-table (LUT), based on mineral densities, was accomplished for the tooth before and after caries removal. Finally, the actual volume of excavated tissue was quantified. Results Correction for beam hardening produced tooth slices with relatively homogeneous gray values along the whole area of enamel and dentin. Accurate mineral-density values were obtained for enamel, dentin and carious regions (2.89, 1.74 and 0.27 g/cm3 , respectively). After pre-processing (3D-median filtering and connected threshold grower algorithm), acceptable segmentation of carious dentin based on gray values was accomplished (Otsu method, gray value = 75 or mineral density = 1.12 g/cm3 ), from which quantitative volumetric parameters were calculated. Significance Accurate calibration, standardization of scanning and reconstruction steps and adequate pre-processing of micro-CT slices allowed detailed volumetric calculation of caries-excavation techniques. |
doi_str_mv | 10.1016/j.dental.2010.01.012 |
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Methods A beam-hardening curve was obtained from an initial reconstruction of a wedge-shaped hydroxyapatite (HAp) block and fitted with a 5th order polynomial function, after which each micro-CT tooth slice was corrected accordingly. Calibration of the 8-bit gray values into mineral-density values was obtained by scanning, reconstructing and processing volume of interests (VOIs) of HAp phantoms with different mineral densities (0.25, 0.75, 3.14 g/cm3 ). One carious tooth was scanned before and after caries removal with an experimental enzyme-based gel. After reconstruction, a 3D-median filter was applied to each micro-CT slice, and a connected threshold grower algorithm was used to blank-out undesired structures in each slice. Volume rendering with a look-up-table (LUT), based on mineral densities, was accomplished for the tooth before and after caries removal. Finally, the actual volume of excavated tissue was quantified. Results Correction for beam hardening produced tooth slices with relatively homogeneous gray values along the whole area of enamel and dentin. Accurate mineral-density values were obtained for enamel, dentin and carious regions (2.89, 1.74 and 0.27 g/cm3 , respectively). After pre-processing (3D-median filtering and connected threshold grower algorithm), acceptable segmentation of carious dentin based on gray values was accomplished (Otsu method, gray value = 75 or mineral density = 1.12 g/cm3 ), from which quantitative volumetric parameters were calculated. Significance Accurate calibration, standardization of scanning and reconstruction steps and adequate pre-processing of micro-CT slices allowed detailed volumetric calculation of caries-excavation techniques.</description><identifier>ISSN: 0109-5641</identifier><identifier>EISSN: 1879-0097</identifier><identifier>DOI: 10.1016/j.dental.2010.01.012</identifier><identifier>PMID: 20347481</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Absorptiometry, Photon ; Advanced Basic Science ; Algorithms ; Anatomy, Cross-Sectional ; Calibration ; Caries excavation ; Density ; Dental Caries - pathology ; Dental Caries - therapy ; Dental Cavity Preparation - methods ; Dental Enamel - pathology ; Dentin ; Dentin - pathology ; Dentin caries ; Dentistry ; Digital image analysis ; Durapatite - chemistry ; Enamels ; Humans ; Hydroxyapatite phantom ; Image Processing, Computer-Assisted - methods ; Imaging, Three-Dimensional - methods ; Mathematical analysis ; Micro-CT ; Mineral density ; Minerals ; Minerals - chemistry ; Phantoms, Imaging ; Reconstruction ; Software ; Thresholds ; X-Ray Microtomography - methods</subject><ispartof>Dental materials, 2010-06, Vol.26 (6), p.579-588</ispartof><rights>Academy of Dental Materials</rights><rights>2010 Academy of Dental Materials</rights><rights>Copyright (c) 2010 Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c514t-e29ca21d99171c1f5c52cfa0b32dee53e8f5eac7a0e29f9f97c891c77b4e92a33</citedby><cites>FETCH-LOGICAL-c514t-e29ca21d99171c1f5c52cfa0b32dee53e8f5eac7a0e29f9f97c891c77b4e92a33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20347481$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Neves, Aline de A</creatorcontrib><creatorcontrib>Coutinho, Eduardo</creatorcontrib><creatorcontrib>Vivan Cardoso, Marcio</creatorcontrib><creatorcontrib>Jaecques, Siegfried V</creatorcontrib><creatorcontrib>Van Meerbeek, Bart</creatorcontrib><title>Micro-CT based quantitative evaluation of caries excavation</title><title>Dental materials</title><addtitle>Dent Mater</addtitle><description>Abstract Objectives To optimize a microtomographic (micro-CT) technique to quantitatively evaluate the effectiveness of contemporary caries-excavation techniques. Methods A beam-hardening curve was obtained from an initial reconstruction of a wedge-shaped hydroxyapatite (HAp) block and fitted with a 5th order polynomial function, after which each micro-CT tooth slice was corrected accordingly. Calibration of the 8-bit gray values into mineral-density values was obtained by scanning, reconstructing and processing volume of interests (VOIs) of HAp phantoms with different mineral densities (0.25, 0.75, 3.14 g/cm3 ). One carious tooth was scanned before and after caries removal with an experimental enzyme-based gel. After reconstruction, a 3D-median filter was applied to each micro-CT slice, and a connected threshold grower algorithm was used to blank-out undesired structures in each slice. Volume rendering with a look-up-table (LUT), based on mineral densities, was accomplished for the tooth before and after caries removal. Finally, the actual volume of excavated tissue was quantified. Results Correction for beam hardening produced tooth slices with relatively homogeneous gray values along the whole area of enamel and dentin. Accurate mineral-density values were obtained for enamel, dentin and carious regions (2.89, 1.74 and 0.27 g/cm3 , respectively). After pre-processing (3D-median filtering and connected threshold grower algorithm), acceptable segmentation of carious dentin based on gray values was accomplished (Otsu method, gray value = 75 or mineral density = 1.12 g/cm3 ), from which quantitative volumetric parameters were calculated. Significance Accurate calibration, standardization of scanning and reconstruction steps and adequate pre-processing of micro-CT slices allowed detailed volumetric calculation of caries-excavation techniques.</description><subject>Absorptiometry, Photon</subject><subject>Advanced Basic Science</subject><subject>Algorithms</subject><subject>Anatomy, Cross-Sectional</subject><subject>Calibration</subject><subject>Caries excavation</subject><subject>Density</subject><subject>Dental Caries - pathology</subject><subject>Dental Caries - therapy</subject><subject>Dental Cavity Preparation - methods</subject><subject>Dental Enamel - pathology</subject><subject>Dentin</subject><subject>Dentin - pathology</subject><subject>Dentin caries</subject><subject>Dentistry</subject><subject>Digital image analysis</subject><subject>Durapatite - chemistry</subject><subject>Enamels</subject><subject>Humans</subject><subject>Hydroxyapatite phantom</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>Imaging, Three-Dimensional - methods</subject><subject>Mathematical analysis</subject><subject>Micro-CT</subject><subject>Mineral density</subject><subject>Minerals</subject><subject>Minerals - chemistry</subject><subject>Phantoms, Imaging</subject><subject>Reconstruction</subject><subject>Software</subject><subject>Thresholds</subject><subject>X-Ray Microtomography - methods</subject><issn>0109-5641</issn><issn>1879-0097</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><recordid>eNqFkVFr2zAQx8XoWNNs32AUv_XJ2Z1kRxaDQglbO8jYw7pnoZzPoNSxG8kOzbev0nR96EvQHyROv7vj_ifEV4QZAs6_rWc1d4NrZxJSCDBJfhATrLTJAYw-E5P0YfJyXuC5uIhxDQCFNPhJnEtQhS4qnIjvvz2FPl_cZysXuc62o-sGP7jB7zjjnWvH9Oy7rG8ycsFzzPiJ3O4l-Fl8bFwb-cvrPRX_fv64X9zlyz-3vxY3y5xKLIacpSEnsTYGNRI2JZWSGgcrJWvmUnHVlOxIO0hkk46myiBpvSrYSKfUVFwd6z6GfjtyHOzGR-K2dR33Y7R6DhLSmNVpUimTBJDI4kim6WMM3NjH4Dcu7C2CPfhr1_borz34awGTZEq7fG0wrjZcvyX9NzQB10eAkyE7z8FG8twR1z4wDbbu_akO7wtQ6ztPrn3gPcd1P4YumW3RRmnB_j3s-LBiTNuFEpR6Bs4Toec</recordid><startdate>20100601</startdate><enddate>20100601</enddate><creator>Neves, Aline de A</creator><creator>Coutinho, Eduardo</creator><creator>Vivan Cardoso, Marcio</creator><creator>Jaecques, Siegfried V</creator><creator>Van Meerbeek, Bart</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7SR</scope><scope>7TB</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>FR3</scope><scope>JG9</scope><scope>L7M</scope></search><sort><creationdate>20100601</creationdate><title>Micro-CT based quantitative evaluation of caries excavation</title><author>Neves, Aline de A ; Coutinho, Eduardo ; Vivan Cardoso, Marcio ; Jaecques, Siegfried V ; Van Meerbeek, Bart</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c514t-e29ca21d99171c1f5c52cfa0b32dee53e8f5eac7a0e29f9f97c891c77b4e92a33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Absorptiometry, Photon</topic><topic>Advanced Basic Science</topic><topic>Algorithms</topic><topic>Anatomy, Cross-Sectional</topic><topic>Calibration</topic><topic>Caries excavation</topic><topic>Density</topic><topic>Dental Caries - pathology</topic><topic>Dental Caries - therapy</topic><topic>Dental Cavity Preparation - methods</topic><topic>Dental Enamel - pathology</topic><topic>Dentin</topic><topic>Dentin - pathology</topic><topic>Dentin caries</topic><topic>Dentistry</topic><topic>Digital image analysis</topic><topic>Durapatite - chemistry</topic><topic>Enamels</topic><topic>Humans</topic><topic>Hydroxyapatite phantom</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>Imaging, Three-Dimensional - methods</topic><topic>Mathematical analysis</topic><topic>Micro-CT</topic><topic>Mineral density</topic><topic>Minerals</topic><topic>Minerals - chemistry</topic><topic>Phantoms, Imaging</topic><topic>Reconstruction</topic><topic>Software</topic><topic>Thresholds</topic><topic>X-Ray Microtomography - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Neves, Aline de A</creatorcontrib><creatorcontrib>Coutinho, Eduardo</creatorcontrib><creatorcontrib>Vivan Cardoso, Marcio</creatorcontrib><creatorcontrib>Jaecques, Siegfried V</creatorcontrib><creatorcontrib>Van Meerbeek, Bart</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Engineered Materials Abstracts</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Dental materials</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Neves, Aline de A</au><au>Coutinho, Eduardo</au><au>Vivan Cardoso, Marcio</au><au>Jaecques, Siegfried V</au><au>Van Meerbeek, Bart</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Micro-CT based quantitative evaluation of caries excavation</atitle><jtitle>Dental materials</jtitle><addtitle>Dent Mater</addtitle><date>2010-06-01</date><risdate>2010</risdate><volume>26</volume><issue>6</issue><spage>579</spage><epage>588</epage><pages>579-588</pages><issn>0109-5641</issn><eissn>1879-0097</eissn><abstract>Abstract Objectives To optimize a microtomographic (micro-CT) technique to quantitatively evaluate the effectiveness of contemporary caries-excavation techniques. Methods A beam-hardening curve was obtained from an initial reconstruction of a wedge-shaped hydroxyapatite (HAp) block and fitted with a 5th order polynomial function, after which each micro-CT tooth slice was corrected accordingly. Calibration of the 8-bit gray values into mineral-density values was obtained by scanning, reconstructing and processing volume of interests (VOIs) of HAp phantoms with different mineral densities (0.25, 0.75, 3.14 g/cm3 ). One carious tooth was scanned before and after caries removal with an experimental enzyme-based gel. After reconstruction, a 3D-median filter was applied to each micro-CT slice, and a connected threshold grower algorithm was used to blank-out undesired structures in each slice. Volume rendering with a look-up-table (LUT), based on mineral densities, was accomplished for the tooth before and after caries removal. Finally, the actual volume of excavated tissue was quantified. Results Correction for beam hardening produced tooth slices with relatively homogeneous gray values along the whole area of enamel and dentin. Accurate mineral-density values were obtained for enamel, dentin and carious regions (2.89, 1.74 and 0.27 g/cm3 , respectively). After pre-processing (3D-median filtering and connected threshold grower algorithm), acceptable segmentation of carious dentin based on gray values was accomplished (Otsu method, gray value = 75 or mineral density = 1.12 g/cm3 ), from which quantitative volumetric parameters were calculated. Significance Accurate calibration, standardization of scanning and reconstruction steps and adequate pre-processing of micro-CT slices allowed detailed volumetric calculation of caries-excavation techniques.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>20347481</pmid><doi>10.1016/j.dental.2010.01.012</doi><tpages>10</tpages></addata></record> |
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subjects | Absorptiometry, Photon Advanced Basic Science Algorithms Anatomy, Cross-Sectional Calibration Caries excavation Density Dental Caries - pathology Dental Caries - therapy Dental Cavity Preparation - methods Dental Enamel - pathology Dentin Dentin - pathology Dentin caries Dentistry Digital image analysis Durapatite - chemistry Enamels Humans Hydroxyapatite phantom Image Processing, Computer-Assisted - methods Imaging, Three-Dimensional - methods Mathematical analysis Micro-CT Mineral density Minerals Minerals - chemistry Phantoms, Imaging Reconstruction Software Thresholds X-Ray Microtomography - methods |
title | Micro-CT based quantitative evaluation of caries excavation |
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